Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq22882 127 2e-24 seq2916 102 8e-17 seq22413 89.7 5e-13 >seq22882 Length=217 Score = 127 bits (140), Expect = 2e-24 Identities = 157/212 (74%), Gaps = 11/212 (5%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGC--CTTCGGCGAGCG 117039 ||||||| |||||||| | ||| ||||||| | || ||| || ||| | |||||| Sbjct 1 AGAAGGCAGAGTGGGCTCAGCGGTGGATCGGC-----AGTGGCAGCAGCTTTGCCGAGCG 55 Query 117040 CCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATT 117099 ||||| || || ||| ||| |||||| || |||| ||| ||| ||| || || Sbjct 56 GCTGGTTGCATTTGCGTGCGTGGAGGGCATCCACTTTAGTGGCTCCTTCTGCGCTATCTT 115 Query 117100 TTGGCTCAAGAAACGCGGC--CTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157 ||||| ||||| ||||| |||||||| || || || ||| |||||||||||||||| Sbjct 116 CTGGCTGAAGAA--GCGGCTGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCC 173 Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 | |||||||| || || |||||||||||| Sbjct 174 CGCGACGAGGGCCTTCACACCGACTTTGCCTG 205 >seq2916 Length=312 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 ||||||||||| | |||||||| || ||||||| || ||||| |||||||| || | Sbjct 2 GAGGGCATCCCTCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGT 61 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 |||||||| ||||| ||||||||||||||| | || || || || |||||||| || Sbjct 62 CGCACCCTGGCTGACTATAACATCCAGAAGGAGTCTACCCTCCACCTGGTGTTGCGTCTG 121 Query 40909 AGGGGCGGC 40917 | || ||| Sbjct 122 CGCGGTGGC 130 >seq22413 Length=220 Score = 89.7 bits (98), Expect = 5e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157 || ||||| ||||| || |||||||||| |||||| || ||| ||||||||||| || Sbjct 1 TTCTGGCTGAAGAAGCGTGGCCTCATGCACGGCCTCACCTTCTCAAACGAGCTCATTTCG 60 Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 ||||||| || || || |||||||||||||| Sbjct 61 CGGGACGAAGGCCTCCACTGCGACTTTGCCTG 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515067268298160