Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq1947 356 3e-93 seq3161 333 3e-86 seq12 221 2e-52 seq213 122 1e-22 seq2164 111 2e-19 seq4603 86.0 8e-12 >seq1947 Length=534 Score = 356 bits (394), Expect = 3e-93 Identities = 397/530 (75%), Gaps = 0/530 (0%) Strand=Plus/Minus Query 138327 TTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTC 138386 ||||| || |||||||||||| ||||||||||| ||| | | ||| | || || ||| Sbjct 532 TTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTC 473 Query 138387 CATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCT 138446 || |||||||| || ||||| || || |||||||| || || || | | || | ||| Sbjct 472 CACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCA 413 Query 138447 CTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAA 138506 || || ||||| |||||||| || ||||| || || || ||| ||||||||| || Sbjct 412 CTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGT 353 Query 138507 TCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACT 138566 |||| || || || || | |||||||| | ||||| ||||| || ||||| ||| Sbjct 352 GCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACT 293 Query 138567 GCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCAC 138626 || ||||||| |||||| || ||||||||| | || || ||| ||||||||| | ||| Sbjct 292 GCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCAC 233 Query 138627 TTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGT 138686 ||||| ||||| |||||||| || | ||||| |||| ||| ||||||| | | || Sbjct 232 TTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGC 173 Query 138687 CTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGAT 138746 || || || ||| | || || ||||| ||||| || ||||| ||||| ||||||||||| Sbjct 172 CTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGAC 113 Query 138747 CCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGG 138806 ||||||||||| ||||||||||| || ||||| | |||| |||||| | || || ||| Sbjct 112 CCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGG 53 Query 138807 ATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGT 138856 ||||| || || || || |||||||| |||| || ||||| || || Sbjct 52 ATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq3161 Length=578 Score = 333 bits (368), Expect = 3e-86 Identities = 297/372 (80%), Gaps = 0/372 (0%) Strand=Plus/Minus Query 135956 TTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTA 136015 ||||| || ||||| || || | || || || |||| | ||||| || |||||| Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 136016 GAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCT 136075 ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 136076 GCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCG 136135 || || |||||||| |||||||| ||||||||||| || || ||||||||||||||||| Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 136136 CTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTA 136195 || ||||| ||||||||||| |||||||| || ||||||||||| |||| || || | Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 136196 TCTACGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAA 136255 ||||| ||||| |||||||| || || ||||||||||||||||| | || ||| || Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 136256 GGTCGTGTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTG 136315 ||||||||| ||||||| |||| || | | || |||||| || |||||||| || Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 136316 ATGCACGAGCGT 136327 |||||||||||| Sbjct 216 ATGCACGAGCGT 205 >seq12 Length=429 Score = 221 bits (244), Expect = 2e-52 Identities = 308/429 (72%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 137901 TTTGTATTTGTGGGTTGGTCTGGACTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGT 137960 ||||| || || ||||||||||| | |||||||| || |||||| | ||| | ||| Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 137961 GGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGT 138020 |||||| |||| || || || || || ||| |||||||| ||||| || || | Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 138021 TATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGT 138080 || || ||||| || ||| | |||||||| || || ||||| || | ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 138081 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAA 138140 ||||| | || | || ||||| || ||| |||||||||| || || |||| |||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 138141 CTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATG 138200 | || || || ||||| ||||| || || || || || || ||| ||||| |||||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 138201 CTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGCATCCGTCCCTACAACGCAATCGCATT 138259 || || ||||||||| | | || |||| | || | ||||| ||||| || || ||||| Sbjct 128 CTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAGC-TTCGTCCTTACAATGCTATTGCATT 70 Query 138260 CTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAG 138319 ||| | || ||||| |||||||| |||||| |||| |||||| | || ||||| | Sbjct 69 CTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATCAGG 10 Query 138320 TTGGTTCTT 138328 |||||| || Sbjct 9 TTGGTTTTT 1 >seq213 Length=407 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 135737 GGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTT 135796 |||||||| |||||||| ||| |||||||| || || ||||| |||||||||||||| Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 135797 TTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCT 135856 ||| | ||||||| | || |||||||| ||| || |||||||| || |||||||| Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 135857 GGAACTTTTAACTACAT 135873 || ||||| |||| ||| Sbjct 96 GGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 111 bits (122), Expect = 2e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 135602 TTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTAT 135661 || || || || |||||||||||||| || || || ||||| || || ||||||||||| Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 135662 CAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAA 135721 |||||| | || | ||||||| | | || ||| || ||||||||||| ||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 135722 CTCTCTTACCG 135732 || |||| ||| Sbjct 213 CTTTCTTTCCG 223 >seq4603 Length=650 Score = 86.0 bits (94), Expect = 8e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 135876 TTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTG 135935 |||||||||| || || |||||||| || ||||| |||||||||||| | || ||||||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 135936 GGGTCTTCGGTGGTTCTCTGTT 135957 | || || |||||||| || || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627782820086400