Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq3161 251 2e-62 seq4603 91.5 4e-14 >seq3161 Length=578 Score = 251 bits (278), Expect = 2e-62 Identities = 305/413 (74%), Gaps = 2/413 (0%) Strand=Plus/Minus Query 19870 TTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGG 19929 ||||||| || |||||||| ||||| ||||| || | ||| ||||| |||||| Sbjct 578 TTTTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGA 519 Query 19930 ATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCG 19989 | | ||| ||| ||| || |||||||| ||||| ||||| || || || ||||| | Sbjct 518 ACGAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTG 459 Query 19990 CTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTT 20049 |||||||||| |||||||| | | || || ||||| ||||| ||||| || ||||||| Sbjct 458 CTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTT 399 Query 20050 CTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAA 20109 || | || ||||| |||||| | | || || ||||| || ||| | || | | || | Sbjct 398 CTCTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTA 339 Query 20110 TCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGA-TGTC 20168 ||| || ||||| ||||||||||| ||||| ||||| |||||||| |||||||| | || Sbjct 338 TCTCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTC 279 Query 20169 AACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAA 20228 || || ||||| || |||| ||| | | || | |||||||| || | ||| Sbjct 278 AA-GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAA 220 Query 20229 GTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTTCGGCTGA 20281 || ||||||||||| || ||||| ||||||||||| || || || || | ||| Sbjct 219 GTAATGCACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCAGTTGA 167 >seq4603 Length=650 Score = 91.5 bits (100), Expect = 4e-14 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 19794 GTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGC 19853 || |||||||| || ||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct 80 GTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTGGT 21 Query 19854 GTATTCGGTGGATCTCTTTT 19873 || || ||||| || ||||| Sbjct 20 GTGTTTGGTGGTTCACTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144401135678796