Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3161 282 7e-71 seq213 140 5e-28 seq53 96.9 6e-15 >seq3161 Length=578 Score = 282 bits (312), Expect = 7e-71 Identities = 305/404 (75%), Gaps = 0/404 (0%) Strand=Plus/Minus Query 212152 TTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTA 212211 ||||| || ||||||||||| | || || || || |||||||||||||| |||| Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 212212 GATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCT 212271 || || ||| ||||||||||||||| ||||||||||| || || ||||| |||||| Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 212272 GCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGT 212331 ||||| || ||||| ||| | || |||||||| || || |||||||||||| | | Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391 | ||||||||||| || |||||||||| | || | ||||| || || | |||||| Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCA 212451 | || |||||||||||||| || || |||||||||||||| || || ||||| | | Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 212452 GGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTT 212511 ||| || | ||||||||||| | | ||| | || ||||| ||||||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 212512 ATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATC 212555 |||||||| | || || |||||||||||||| ||||| ||||| Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATC 173 >seq213 Length=407 Score = 140 bits (154), Expect = 5e-28 Identities = 115/140 (82%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 211930 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCT 211989 ||||||||||||||||||||| ||| ||||| || ||||| || |||| ||| ||| Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 211990 GTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATA 212049 |||||| | | |||||| ||||||| ||||||||||||||||||||||| |||| || Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 212050 TCAGGAACATTCAACTTCAT 212069 || || || ||||||||||| Sbjct 99 TCGGGTACTTTCAACTTCAT 80 >seq53 Length=414 Score = 96.9 bits (106), Expect = 6e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 211701 CGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAACATCATCTCTGG 211760 |||||| ||||||||||||||| ||||||| | | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 211761 TGCAGTTGTTCCATCTTCAAA 211781 |||||||||||| ||||||| Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807317062065960