Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq3161 298 6e-76 seq1947 250 3e-61 seq12 205 1e-47 seq213 116 4e-21 seq1029 96.9 4e-15 seq2164 84.2 2e-11 >seq3161 Length=578 Score = 298 bits (330), Expect = 6e-76 Identities = 312/407 (77%), Gaps = 6/407 (1%) Strand=Plus/Minus Query 171254 GCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGT 171313 |||||||||||||| | || || || ||||| ||| | || || ||||||||||| | Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 171314 CAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCAT 171373 ||| || || |||||||| |||||||||||||| || |||||||||||||| || Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 171374 GGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACAC 171433 || ||||| ||| | |||||||||| || || |||||||||||||||||||| | ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 171434 TTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACA 171493 |||||||| |||| || |||||||| || | ||||| || || | ||||||| ||| Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 171494 ATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAG 171553 |||||||||||||||||||| |||||||||||||| || || || || | | || Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGG---T 274 Query 171554 ATTGT-ACCAACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATG 171610 ||| | ||||| ||||| || | | ||| | || ||||| || |||||||| ||| Sbjct 273 CGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATG 214 Query 171611 CATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 171657 || || | || || |||||||||||||||||| | ||||| | ||| Sbjct 213 CACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCAGTTGA 167 >seq1947 Length=534 Score = 250 bits (276), Expect = 3e-61 Identities = 387/552 (70%), Gaps = 23/552 (4%) Strand=Plus/Minus Query 172257 TTCGCACCTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTC 172316 || |||||| |||||||| || |||||||| |||| || | ||| | || || ||| Sbjct 532 TTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTC 473 Query 172317 CACAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCA 172376 ||||| || ||||| || || || ||||||||||| || || | | || | ||| Sbjct 472 CACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCA 413 Query 172377 TTACTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAA 172436 | || ||||| || ||||| |||||||| ||||||| ||| |||||| Sbjct 412 CTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGA---------- 363 Query 172437 TACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAA 172496 || || | | | ||| | || ||| | || ||| ||||||| |||| ||| Sbjct 362 -----TGGAGAT--GGTGCAAAC----ACATTCCGTGCGTTCAATCCTACTCAGGCTGAA 314 Query 172497 GAAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTT 172556 || || || |||| | ||||| ||| | |||||||||||||| ||||| ||||||| Sbjct 313 GAGACCTACTCTATGGTAACTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTC 254 Query 172557 TCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACA 172616 || ||||| | | || |||||| | ||| | || || || || | ||| | |||| Sbjct 253 TCTAACAAGCGTTGGTTGCACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATG 194 Query 172617 TCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAA 172676 |||| ||| || |||| || || || ||| | | || || ||||| || |||||| Sbjct 193 AGTGCTATTGGTGTCTTAGGCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAA 134 Query 172677 GAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTT 172736 ||||| | |||||||||||||| || || |||||||||||||| || ||||| ||| || Sbjct 133 GAGATTCGCGCAGCAGAAGACCCTGAATTCGAAACCTTCTACACAAAAAACAT-CTTGTT 75 Query 172737 -AATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTT 172795 || |||||||| ||||||||||| | || || || || || || || |||| || Sbjct 74 GAACGAAGGTATTCGAGCATGGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATT 15 Query 172796 CCCAGAAGAAGT 172807 ||| || || || Sbjct 14 CCCTGAGGAGGT 3 >seq12 Length=429 Score = 205 bits (226), Expect = 1e-47 Identities = 278/385 (72%), Gaps = 6/385 (2%) Strand=Plus/Minus Query 171830 TTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGG 171889 ||| || ||| | || |||||||| | ||||||| ||||| ||||| || || | || Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGG 370 Query 171890 AGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTC 171949 || ||||| |||||| |||||||| || || |||||||| || || | ||| || Sbjct 369 TGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTC 310 Query 171950 ATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGG 172009 ||| || || || ||||| ||||| |||||||| ||||| || | | ||||| Sbjct 309 ATACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGG 250 Query 172010 TCATAGTCTATTG---TTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTT 172066 ||| || |||| ||||||||||| || ||||| |||||||| | |||||||| Sbjct 249 GCAT--TC-ATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTG 193 Query 172067 TCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTT 172126 ||||| ||||| || |||| ||||||||| | ||||| | || | || || || || Sbjct 192 CCAATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTT 133 Query 172127 CATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGC 172186 |||||| | ||||||||| ||||| | ||| | | ||||||||||| || | || Sbjct 132 CATGCTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAGCTTCGTCCTTACAATGCTATTGC 73 Query 172187 ATTCTCAGCAGTTATTGCAGTATTC 172211 |||||||||| || ||||| ||| Sbjct 72 ATTCTCAGCACCAATCGCAGTGTTC 48 >seq213 Length=407 Score = 116 bits (128), Expect = 4e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 171027 TAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAG 171086 |||| ||| | |||||||| |||||| ||||| ||||| || | || || ||| | Sbjct 218 TAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTG 159 Query 171087 TATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCT 171146 ||||| | | || ||| ||||||| ||||||||||| || |||||||||||||| || | Sbjct 158 TATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTT 99 Query 171147 CAGGTACGTTCAACTTCAT 171165 | ||||| ||||||||||| Sbjct 98 CGGGTACTTTCAACTTCAT 80 >seq1029 Length=1000 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||||| ||||| ||| |||||| || ||| | ||| |||||||||||||||| || Sbjct 649 TTCTGTGAATGGGTTACAAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 590 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| |||| | ||||| || || |||||| | ||||| | ||||||||| Sbjct 589 ATGATCCCTACTCTTTTGACTGCAACTTCTGTATTCATTATTGCATTTGTTGCTGCTCCT 530 Query 170786 CCAGTCGATAT 170796 || || || || Sbjct 529 CCTGTAGACAT 519 >seq2164 Length=396 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/128 (77%), Gaps = 6/128 (5%) Strand=Plus/Plus Query 170894 TTCTATCCCATCTGGGAAGCAGC--CACTATGGACGAGTGGTTGTACAACGGAGGTCCTT 170951 || || || || |||||||| || ||||| ||||| ||| | |||||||| ||||||| Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTA--GACGAATGGCTTTACAACGGTGGTCCTT 150 Query 170952 ACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCT-CTGCCTACATGGGTAGACAGTGG 171010 |||| || | ||| ||||||| | | || |||| ||| |||||||||| | ||||| Sbjct 151 ACCAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTG-CTACATGGGTCGTGAGTGG 209 Query 171011 GAACTATC 171018 ||||| || Sbjct 210 GAACTTTC 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570100634859240