Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq3161 398 9e-106 seq1947 356 3e-93 seq12 194 2e-44 seq2164 114 1e-20 seq213 104 3e-17 seq4603 98.7 1e-15 >seq3161 Length=578 Score = 398 bits (440), Expect = 9e-106 Identities = 330/402 (82%), Gaps = 1/402 (0%) Strand=Plus/Minus Query 166634 TTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAA 166693 ||||||| ||||||||||| | || ||||| || || ||||||| || ||||| | Sbjct 578 TTTTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGA 519 Query 166694 CTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGG 166753 || ||| ||| |||||||||||| |||||||||||||| || |||||||| || | Sbjct 518 ACGAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTG 459 Query 166754 CTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCT 166813 |||| || |||||||| ||||| || ||||||||||||||||| |||||||||||||| | Sbjct 458 CTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTT 399 Query 166814 CGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTG 166873 | || ||||||||||| || ||||||||||| || ||||||||||| |||||||||||| Sbjct 398 CTCTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTA 339 Query 166874 TTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTC 166933 | ||||||||||||||||| ||||||||||||||||||||||| | | || || Sbjct 338 TCTCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTC 279 Query 166934 AGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAG 166993 | |||||||| |||||||||||| || || ||||||||||| || |||||||||| Sbjct 278 AAGGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAG 219 Query 166994 TAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTG 167035 |||||||||||||||| |||||||||||||| || || |||| Sbjct 218 TAATGCACGAGCGTAACGCTCACAACTTCCCACTAGA-CTTG 178 >seq1947 Length=534 Score = 356 bits (394), Expect = 3e-93 Identities = 397/530 (75%), Gaps = 0/530 (0%) Strand=Plus/Minus Query 167762 TTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTC 167821 |||||||| |||||||| || || || || | ||| | || ||| | || || ||| Sbjct 532 TTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTC 473 Query 167822 CATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCA 167881 || |||||||| || ||||||||||| |||||||| || ||||| | |||| | |||| Sbjct 472 CACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCA 413 Query 167882 TTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAA 167941 | |||| |||||| ||||| | ||||| ||||| || |||| ||||||||| || Sbjct 412 CTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGT 353 Query 167942 GCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACT 168001 |||||||| ||| || || || | ||||||| || || || || || ||||| ||| Sbjct 352 GCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACT 293 Query 168002 GCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCAC 168061 || ||||| |||||||| || || ||||| | || ||| || ||||||||||||||| Sbjct 292 GCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCAC 233 Query 168062 TTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGT 168121 ||||| |||||||| ||||| || | || ||||||| ||| |||||||| || | || Sbjct 232 TTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGC 173 Query 168122 CTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGAT 168181 || || || || | |||||||||||||| || ||||| || || | |||||||| || Sbjct 172 CTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGAC 113 Query 168182 CCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGG 168241 || || || ||||| ||||| || ||||||||| | | || ||||| | || || ||| Sbjct 112 CCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGG 53 Query 168242 ATGGCTCCAGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGT 168291 ||||| | |||||| ||||| ||||| |||||||||| || || || Sbjct 52 ATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq12 Length=429 Score = 194 bits (214), Expect = 2e-44 Identities = 302/429 (70%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 167336 TTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGT 167395 ||||| || || || |||||||| || || ||||| || |||||||| || | ||| Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 167396 GGCTGGCTTACTGGCACGACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGT 167455 |||||| |||| || || || || || || ||||| || ||||| || || | Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 167456 TACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGT 167515 ||||| || ||| || || | || ||||||||||||||||| || || ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 167516 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAG 167575 ||||| | || | || ||||| || ||| |||| || || |||| | |||||||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 167576 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATG 167635 | || || || ||| | ||||| || || || || || || ||||| || || || ||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 167636 CTTCGGCAATTTGAGATAAGTAGACT-AGTAGGTATCCGTCCTTACAATGCGATTGCTTT 167694 || || || |||||| | | | || ||| | |||||||||||||| ||||| || Sbjct 128 CTGCGTCAGTTTGAGCT-TGCACGCTCTGTAAAGCTTCGTCCTTACAATGCTATTGCATT 70 Query 167695 TTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAG 167754 || | || || || || || || ||||| || | ||||||||||| ||||| || | Sbjct 69 CTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATCAGG 10 Query 167755 TTGGTTCTT 167763 |||||| || Sbjct 9 TTGGTTTTT 1 >seq2164 Length=396 Score = 114 bits (126), Expect = 1e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 166282 TTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTC 166341 || || || || |||||||| || ||||| || ||||||||||| ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 166342 CAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAA 166401 || || | || | ||||||| || | ||||||| ||||||||||||||| |||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 166402 TTGTCTTACCG 166412 | |||| ||| Sbjct 213 CTTTCTTTCCG 223 >seq213 Length=407 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 166417 GGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTC 166476 ||||||||||||||||| ||||| ||||||||||| |||||||| || | || || Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 166477 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGT 166536 ||| | |||| || ||||||||||||| ||||| |||| ||||| || || || Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 166537 GGCACCTTCAACTACAT 166553 || || ||||||| ||| Sbjct 96 GGTACTTTCAACTTCAT 80 >seq4603 Length=650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 166556 TTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAG 166615 |||| |||||||| |||||||||||||| |||||||| ||||| ||||| ||||| || | Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 166616 GTGTATTCGGTGGGTCACTTTT 166637 |||| || ||||| |||||||| Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567064730373600