Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq8914 95.1 2e-14 seq1723 93.3 8e-14 seq22882 91.5 3e-13 seq2916 89.7 9e-13 seq22038 84.2 4e-11 >seq8914 Length=470 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 173318 CTCGAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAATGATGGCACGTGCA 173377 || || || ||||| || || ||||||||||||| || || |||||||| || ||| Sbjct 153 CTGGAACCCACAAATCCCTACTCAGCAGCCAAGGCGGGGGCGGAAATGATAGCCAAAGCA 212 Query 173378 TATCACACATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCG 173437 || | || || |||||| | || |||||| ||| || ||||| ||||||||||| || Sbjct 213 TACCTAACCTCCTACAAGTTGCCTGTCATCACGACCCGGGGCAATAATGTGTATGGGCCA 272 Query 173438 CATCAGTTCCCCGAAAAAATGATCCCAAAATTTATTCTTCGCGCAACCCGTGGCCTGGAC 173497 ||||||| || || || || ||||| || | || | ||| || | || |||| Sbjct 273 AATCAGTTTCCGGAGAAGTCAATACCAAAGTTCACACTGCTGGCAGCCAGAGGAGAGGAC 332 Query 173498 CTCCC 173502 || || Sbjct 333 CTTCC 337 >seq1723 Length=1780 Score = 93.3 bits (102), Expect = 8e-14 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 173128 GCAGACCCATGTGGACAACTCGTTCGGTAACTCGCTGGCATTTACCATGAACAACGTCTA 173187 |||||| || ||||||||||| || || |||||||| || || |||||||||||| || Sbjct 1248 GCAGACACACGTGGACAACTCCTTTGGCAACTCGCTAGCTTTCACCATGAACAAC-ACTT 1306 Query 173188 CGGGACCCACGTTCTCCTGGAATGCGCGAGGCTCTATGGCGGTGTCCAGCGGTTCATCAA 173247 ||| || ||||| | ||||| || | | || ||| || |||||||||| Sbjct 1307 CGGCACACACGTCTTGCTGGAGGCAGCACGCGTGTACGGCAAAATCAGGCGGTTCATCGC 1366 Query 173248 TGTGTCTACCGACGAAGTATACGGCGAGAGCAGTCTGGGCAAAAAAGAAGGCCTCGATGA 173307 |||||| || || || || || || |||| ||| | ||| | || | ||| Sbjct 1367 TGTGTCCACTGATGAGGTGTATGGAGAGACCAGCGTTGGCCGCGACTCTGGTTGCACTGA 1426 Query 173308 ACACTCGTCCCTCGAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGTGC 173358 ||| |||||||||| || || || || | || |||||||||||||| Sbjct 1427 GACCTCAACCCTCGAGCCTACCAATCCCTACTCTGCTGCCAAGGCTGGTGC 1477 >seq22882 Length=217 Score = 91.5 bits (100), Expect = 3e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312 ||| ||||||||||||||| ||||| ||||||||| || || || ||||||||| Sbjct 191 GTGAAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCAG 132 Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACCCTCCACGCA 10372 ||| || ||||||||| || |||||||| || || || | | ||||||||||| Sbjct 131 CCGCTTCTTCAGCCAGAAGATAGCGCAGAAGGAGCCACTAAAGTGGATGCCCTCCACGCA 72 Query 10373 CACCCAGGCGACGAGGCGCTCTGCGAAG 10400 | | | || || || ||||| || ||| Sbjct 71 CGCAAATGCAACCAGCCGCTCGGCAAAG 44 >seq2916 Length=312 Score = 89.7 bits (98), Expect = 9e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || ||||| |||| ||| || || ||||| || ||||||||||| || | Sbjct 129 CCACCGCGCAGACGCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCAGCC 70 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || ||||| | || ||||| || || Sbjct 69 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGG 10 Query 68355 ATGCCTTCC 68363 ||||| ||| Sbjct 9 ATGCCCTCC 1 >seq22038 Length=370 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/123 (76%), Gaps = 6/123 (5%) Strand=Plus/Plus Query 173527 GCGGTCGTATTTGTATGTTGATGACGTGGCAGAGGC---TTACATTACTATTTTGCTCAA 173583 |||||| || |||| || || || ||||||||||| | |||| || ||| ||| Sbjct 143 GCGGTCATACCTGTACGTGGAGGATGTGGCAGAGGCATTTGACAT---GATCCTGCACAA 199 Query 173584 GGGCAATGTCGGGGAAACGTACAACATTGGCACACAGAAGGAGCGCAGTGTTGTAGATGT 173643 |||| || || || ||||||||||| ||||||||||||||||||| ||| | || || Sbjct 200 GGGCGTGGTGGGCGAGACGTACAACATCGGCACACAGAAGGAGCGCACTGTCATGGACGT 259 Query 173644 TGC 173646 ||| Sbjct 260 TGC 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921350625074520