Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq22882 116 7e-21 >seq22882 Length=217 Score = 116 bits (128), Expect = 7e-21 Identities = 158/216 (73%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 42646 AGAAGGCGGACTGGGCGCTCAAC--TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 ||||||| || ||||| ||| | ||||||| ||| | ||| | || | |||| | Sbjct 1 AGAAGGCAGAGTGGGC--TCAGCGGTGGATCGGCAGTGGCA--GCAGCTTT-GCCGAGCG 55 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 |||||| || ||| | ||| ||||||||| ||| ||| ||||| | | ||||| Sbjct 56 GCTGGTTGCATTTGCGTGCGTGGAGGGCATCCACTTTAGTGGCTCCTTCTGCGCTATCTT 115 Query 42764 CTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 |||||| ||| || | || ||||| || ||||||||||| ||||| |||||| | | Sbjct 116 CTGGCTGAAGAAGCGGCTGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCCCG 175 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCT 42859 |||||||| || || | ||||||||||||||||| Sbjct 176 CGACGAGGGCCTTCACACCGACTTTGCCTGCCTCCT 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944060726174160