Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq3161 398 9e-106 seq1947 331 1e-85 seq12 199 5e-46 seq213 147 3e-30 seq2164 116 5e-21 seq4603 104 3e-17 seq53 91.5 2e-13 >seq3161 Length=578 Score = 398 bits (440), Expect = 9e-106 Identities = 322/390 (83%), Gaps = 0/390 (0%) Strand=Plus/Plus Query 7543 GTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACG 7602 ||| || |||||||||||||| |||||||||||||| |||||||| || || |||||| Sbjct 181 GTCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGGTTAGCACG 240 Query 7603 GTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTT 7662 ||||| | ||| |||| ||||| | |||||||||||| |||| | |||||||| Sbjct 241 GTTGATGATGTCACCCCAAGTGTTGATTACACGACCTTGAGAGTCAACTACAGACTGGTT 300 Query 7663 GAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGAT 7722 ||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| Sbjct 301 GAAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGATACCAAGAGCAGTGAACCAGAT 360 Query 7723 GCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGC 7782 ||||| || |||||||| || ||||||||||| || ||||| ||||||||||| ||||| Sbjct 361 ACCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAGAACGAGAGTTGTTGAATGAAGC 420 Query 7783 GTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTC 7842 |||||||||||| |||||||||||||| ||||| |||||||| |||||||| || ||||| Sbjct 421 GTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAAGTTTCTTC 480 Query 7843 TTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAG 7902 ||||||||||||||| |||||| ||| || || |||||| |||||||| | || Sbjct 481 TTCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGTTCTCAGTAGTTTCACGGATAAG 540 Query 7903 AGAAGAGGTTACAAGCGAACCATGCATCGC 7932 ||| || ||||| | ||||| ||||| || Sbjct 541 AGATGAAGTTACCAATGAACCGTGCATTGC 570 >seq1947 Length=534 Score = 331 bits (366), Expect = 1e-85 Identities = 384/518 (74%), Gaps = 0/518 (0%) Strand=Plus/Plus Query 6284 ACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCCACTGGTGCCATCCAGGCACGT 6343 || || ||||| ||||||| ||||| ||||| || || | |||||||| || || Sbjct 3 ACCTCCTCAGGGAATACAAGTTTTTCGTGTGGCTGGTCTTGAGCCGCCATCCATGCTCGA 62 Query 6344 AGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTCTCGAACTCTGGATCCTCCGCT 6403 | |||||| ||||| | |||||| || || ||||| || ||||| || || || || ||| Sbjct 63 ATACCTTCGTTCAACAAGATGTTTTTTGTGTAGAAGGTTTCGAATTCAGGGTCTTCTGCT 122 Query 6404 GCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGGTTAAGTGCAAGACCAATAATA 6463 || | |||||||| ||||| ||||||||||| | | ||| || || || || | | | Sbjct 123 GCGCGAATCTCTTGAGAAACGAAGTCATAAGCACGCAAGTTTAGCGCTAGGCCTAAGACA 182 Query 6464 CCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAACAGCATAAAGAAATGTAGCCAA 6523 ||||| | |||||||||| | || |||||||| ||||| ||||| || | |||| Sbjct 183 CCAATAGCACTCATCCAAAGACCGGTTACCGGAACAAAAAGCATGAAGAAGTGCAACCAA 242 Query 6524 CGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATC 6583 ||||| || ||| || | ||||||||||| ||||||||||| || || || ||||| Sbjct 243 CGCTTGTTAGAGAATGCTACTCCAAAGATCTGTGACCAGAAACGGTTTGCAGTTACCATA 302 Query 6584 GAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATTTGATTGTTCACCA 6643 || |||||||| || | || ||||| | ||||| ||| || |||| || ||| Sbjct 303 GAGTAGGTCTCTTCAGCCTGAGTAGGATTGAACGCACGGAATGTGTTTGCACCATCTCCA 362 Query 6644 TCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCT 6703 |||||||||| || ||||| || || || || ||||| ||||| || | ||| | ||| Sbjct 363 TCTTCAAACAGCGTGTTCTCAACTGTTGCGCCATGAATTGCACAAAGAAGTGCAGCTCCT 422 Query 6704 AAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGT 6763 || | || || ||||||||||| || || ||||| || |||||||||||||| || || Sbjct 423 AACACGCCAGCCACACCCATCATGTGGAAAGGGTTAAGTGTCCAGTTGTGGAACCCTTGG 482 Query 6764 AGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801 | |||||| | ||| ||||| || || || |||||||| Sbjct 483 AAGAAGAGGATGAAACGGAAGATTGCAGCCACACCAAA 520 >seq12 Length=429 Score = 199 bits (220), Expect = 5e-46 Identities = 303/429 (71%), Gaps = 2/429 (0%) Strand=Plus/Plus Query 6812 AAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAATG 6871 || ||||||| || ||||| |||||||| || | || ||||| || || || || || Sbjct 1 AAAAACCAACCTGATTGTCCTAGAGGATAGATCAAGAACACAGAAACGAACACTGCGATT 60 Query 6872 GGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGCGATCTCAAA 6930 || | || || || || |||||||| ||||||| || ||| ||||| | |||||| Sbjct 61 GGTGCTGAGAATGCAATAGCATTGTAAGGACGAAGCTTTAC-AGAGCGTGCAAGCTCAAA 119 Query 6931 CTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATAG 6990 ||| || |||||||| || || || || || || || || || || ||||| | ||| || Sbjct 120 CTGACGCAGCATGAACCCAATTAGAGCGAAAGCACCATGAAGAGCTACAAAGGTCCAAAG 179 Query 6991 TCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAAG 7050 || || | |||| ||| || ||| ||||| ||||| ||||| |||||||| | || Sbjct 180 ACCACCCAATTGGCACCATCGTGTGAAGTCTCCTTGAGCCTCTGGGCCCCATAGGAAGAG 239 Query 7051 TAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACATCC 7110 | ||||| || | || || |||||||| || || || || | ||| || || || Sbjct 240 CAATGAATGCCCCATGCTGTTTGCTGGAGTTGACACTGCTGCTGTTAAGAAGTTGCAACC 299 Query 7111 CTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGTTGTGCCCGT 7170 || || || ||| || | ||||| |||||||| || |||||||| || || || Sbjct 300 TTCTAGGTATGAACTTGCTAAGCCGTGCGTGTACCAAGATGTTACGAAAGTGGTTCCTGT 359 Query 7171 GAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGACCAACCAAC 7230 | ||| || |||| || || ||||| |||||| || || | || ||||||||||| Sbjct 360 AAACCAGCCACCCAAGGCAAGATAAGCGCAAGGGAAAAGTAGCAAGCCAGACCAACCAAC 419 Query 7231 AAAAACGAA 7239 || || || Sbjct 420 GAACACAAA 428 >seq213 Length=407 Score = 147 bits (162), Expect = 3e-30 Identities = 116/139 (83%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 8021 ATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCG 8080 ||| ||||||| ||||| || ||||| || |||||| |||| ||||| |||||||||||| Sbjct 80 ATGAAGTTGAAAGTACCCGAAATGCCTAGTGGCATACCGTCTGAGAATGAACCTTGACCG 139 Query 8081 AAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAG 8140 | || |||| || ||||||||||| || || |||||||| |||||||| |||||| | Sbjct 140 ATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGCG 199 Query 8141 ATCCAGGGACGCATACCTA 8159 ||||| ||||||||||||| Sbjct 200 ATCCAAGGACGCATACCTA 218 >seq2164 Length=396 Score = 116 bits (128), Expect = 5e-21 Identities = 107/133 (80%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 8161 ACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCAT-AGATACCGATCAGGAAGTGGA 8219 |||| |||||||||||||||||||||||||||| ||| |||| || | | ||||||| Sbjct 224 ACGGAAAGAAAGTTCCCACTCACGACCCATGTA-GCAGCAGATGCCTAGGAAGAAGTGGC 166 Query 8220 AGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCC 8279 | | | |||||| |||||||||||||||| ||||| || || || ||||| ||||||| Sbjct 165 AAACGATTAGTTGGTAAGGACCACCGTTGTAAAGCCATTCGTCTAGTGAAGCAGCTTCCC 106 Query 8280 AGATGGGATAGAA 8292 | || || || || Sbjct 105 AAATAGGGTAAAA 93 >seq4603 Length=650 Score = 104 bits (114), Expect = 3e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 7937 AACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATG 7996 || || ||||||||||| |||||||| || || ||||||||||| |||||||| |||||| Sbjct 1 AAAAGTGAACCACCAAACACACCAGCAACACCTAGCATGTGGAAAGGGTGCATAAGGATG 60 Query 7997 TTGTGCTCTGCTTGGAAGACAA 8018 |||||||| |||||||| |||| Sbjct 61 TTGTGCTCAGCTTGGAAAACAA 82 >seq53 Length=414 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 8309 TTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCG 8368 || |||| ||||||||| ||||||||||||||||||||||| || | || ||||||| Sbjct 1 TTTGAAGTAGGAACAACTGCACCAGAGATGATGTTGTTGCCGTAAAGTAGAGAACCAGAT 60 Query 8369 ACGGGTTCACGGATGCCGTC 8388 || ||||||||||| ||||| Sbjct 61 ACTGGTTCACGGATACCGTC 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621941343173040