Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq22882 125 9e-24 seq7595 84.2 3e-11 >seq22882 Length=217 Score = 125 bits (138), Expect = 9e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||| ||||||||||| || || |||||| || || Sbjct 202 GCAAAGTCGGTGTGAAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCC 143 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| ||||||||||| |||||| || || || || |||||| ||| ||| Sbjct 142 GGCATGAGCAGCCGCTTCTTCAGCCAGAAGATAGCGCAGAAGGAGCCACTAAAGTGGATG 83 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 |||||||| ||||| || |||| || |||||||||||| Sbjct 82 CCCTCCACGCACGCAAATGCAACCAGCCGCTCGGCAAAG 44 >seq7595 Length=822 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 ||||||| ||||||||| ||||| |||| ||| | || || |||||||||| | Sbjct 136 AGGTGCTGATTGACAACGGTGAACTCGCCCGAGAGCACTCTTCGCACATAGATGTTGCTA 195 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCA 115945 ||||| |||||||||||||||||||| |||| Sbjct 196 GTGTACGGCTCAAAGCACTCATTGTTGCCCA 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613326284395560