Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq3161 407 2e-108 seq1947 320 2e-82 seq12 214 2e-50 seq213 127 2e-24 seq2164 122 1e-22 seq4603 98.7 1e-15 seq53 87.8 2e-12 seq7328 86.0 8e-12 >seq3161 Length=578 Score = 407 bits (450), Expect = 2e-108 Identities = 336/410 (82%), Gaps = 0/410 (0%) Strand=Plus/Minus Query 180330 TTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACT 180389 ||||| ||||||||||||||| |||| || || || || | |||||||| ||||| | Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 180390 GAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCT 180449 || || ||| ||||||||||| |||||||||||||| || |||||||| |||||| Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 180450 GCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCA 180509 ||||| || ||||| |||||||| |||||||| || || || ||||||||||| ||||| Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 180510 CTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTA 180569 |||||||||||||| || ||||||||||| ||||| |||||||||||||| || || | Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 180570 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAA 180629 ||||||||||||||||| ||||||||||||||||||||||| | |||| |||| Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 180630 GGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTT 180689 |||||||| |||||||||||| ||| | ||||||| ||| || ||||||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 180690 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGA 180739 |||||||||||||| ||||||||||||||||| ||| ||||| | | ||| Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCAGTTGA 167 >seq1947 Length=534 Score = 320 bits (354), Expect = 2e-82 Identities = 389/530 (73%), Gaps = 0/530 (0%) Strand=Plus/Minus Query 181886 TTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTT 181945 ||||| || || || ||||| || || || ||||| ||| | |||||| |||| || || Sbjct 532 TTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTC 473 Query 181946 CATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCA 182005 || || ||||| || || || ||||| ||||||||||| ||||| | | || | ||| Sbjct 472 CACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCA 413 Query 182006 TTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAA 182065 | || | ||||||||| || | || || ||||| || |||| | |||| || || Sbjct 412 CTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGT 353 Query 182066 GCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACA 182125 ||||| || ||| || ||| || | ||||| | ||||| ||||| || ||||| || Sbjct 352 GCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACT 293 Query 182126 GCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCAT 182185 || ||||| |||||||| |||||||| || | || || || ||| | |||||||| Sbjct 292 GCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCAC 233 Query 182186 TTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGT 182245 ||||| ||||| |||||||| || | |||||||||| ||| | || ||| | | || Sbjct 232 TTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGC 173 Query 182246 CTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGAC 182305 || || || ||| | |||||||||||||| || || ||||| || | ||| |||||||| Sbjct 172 CTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGAC 113 Query 182306 CCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGG 182365 || || ||||| || ||||||||||| ||||| | ||||| |||||| | || |||||| Sbjct 112 CCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGG 53 Query 182366 TTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGT 182415 | || | || || ||||| || || |||| ||||||||||| || Sbjct 52 ATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq12 Length=429 Score = 214 bits (236), Expect = 2e-50 Identities = 308/432 (71%), Gaps = 8/432 (2%) Strand=Plus/Minus Query 181460 TTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGG 181519 ||||| || || || |||||||| | || ||||| || ||||||||||| | || Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 181520 GGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCC 181579 |||||| | || || || ||||| || || || |||||||| ||||| || || ||| Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 181580 TACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGT 181639 ||||| || ||| || ||| | ||||| || |||||||| || || || ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 181640 CATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAA 181699 ||||| | || | || ||||| || || ||||| || || ||| || ||| |||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 181700 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATG 181759 | || || || ||| | ||||| || || || || || |||||||| || || || ||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 181760 CTCAGGCAATTTGAACTTGCTCG-TCT---AATCGGAATCCGACCCTACAATGCGATTGC 181815 || | || ||||| ||||| || ||| || | | || || |||||||| ||||| Sbjct 128 CTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAGC----TTCGTCCTTACAATGCTATTGC 73 Query 181816 TTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATC 181875 || || | || || || || ||||| ||||| || | ||||||||||| |||||||| Sbjct 72 ATTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATC 13 Query 181876 CAGTTGGTTCTT 181887 ||||||| || Sbjct 12 AGGTTGGTTTTT 1 >seq213 Length=407 Score = 127 bits (140), Expect = 2e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 180108 TTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCT 180167 || |||||||| || |||||| ||||| || ||||| ||||| || || || ||||| Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 180168 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCATT 180227 |||||| || |||| || ||||||||||||||||||| |||| ||||| || |||||| Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 180228 TCTGGCACCTTCAACTACAT 180247 || || || ||||||| ||| Sbjct 99 TCGGGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 122 bits (134), Expect = 1e-22 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 179976 TTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTC 180035 || || || || |||||||| || || || ||||| ||||| || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 180036 CAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAA 180095 ||||| |||| | ||||||| | | ||||||| |||||||||||||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 180096 CTTTCTT 180102 ||||||| Sbjct 213 CTTTCTT 219 >seq4603 Length=650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 180250 TTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAG 180309 ||||||||||||| |||||||||||||| |||||||| ||||||||||| || || || | Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 180310 GTGTCTTCGGCGGTTCACTGTT 180331 |||| || || |||||||| || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq53 Length=414 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 179879 CGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGG 179938 ||| || ||||||||||| || ||||||| || | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 179939 TGCAGTTGTTCCTTCTTCCAA 179959 ||||||||||||| |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 >seq7328 Length=399 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 141255 TCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAATC 141314 ||||||||||||||| || ||||| || ||||||| || ||||||||||||||| || Sbjct 107 TCCTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGGTTGGTCGTAGGTTCAAGTC 48 Query 141315 CTACCTGGGGAG 141326 |||||||||||| Sbjct 47 CTACCTGGGGAG 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610216801613640