Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3161 311 1e-79 seq1947 260 2e-64 seq12 156 5e-33 seq213 140 4e-28 seq53 84.2 3e-11 >seq3161 Length=578 Score = 311 bits (344), Expect = 1e-79 Identities = 315/410 (77%), Gaps = 0/410 (0%) Strand=Plus/Minus Query 169984 TTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAA 170043 |||||||||||||| |||||| | || ||||||||||| ||| | ||||| || ||| | Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 170044 GAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCA 170103 || || ||| |||||| |||||||| |||||||||||||| |||||||| || || Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 170104 GCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGT 170163 ||||||||||||||||||||||| |||||||| || ||||||||||||||||| | | Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 170164 CTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATC 170223 || ||||||||||| || | | ||||| || || | ||||| || || | |||||| Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 170224 TGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAAC 170283 | || |||||||||||| | || ||||||||||| ||||| || || ||||| || | Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 170284 GGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTT 170343 || | || || |||||||| | | ||| | || ||| | ||||||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 170344 ATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 170393 ||||| || | || || |||||||||||||||||| | ||||| | ||| Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCAGTTGA 167 >seq1947 Length=534 Score = 260 bits (288), Expect = 2e-64 Identities = 382/540 (71%), Gaps = 23/540 (4%) Strand=Plus/Minus Query 171003 TTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACA 171062 || ||||| || ||||| || |||| ||| | ||| | ||||| ||||||||| ||| Sbjct 520 TTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTCCACAACTGGACA 461 Query 171063 TTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCC 171122 | || || || |||||||||||||| || || | |||| | ||| | | ||||| Sbjct 460 CTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCACTTCTTTGTGCA 401 Query 171123 ATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAAT 171182 |||||||| |||||||| ||||||| ||| |||||| | || || Sbjct 400 ATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAG------ATGGTG----- 352 Query 171183 AAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGT 171242 |||| ||||||||||| || ||||||| |||| ||||| || ||| | Sbjct 351 ------CAAAC----ACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCT 302 Query 171243 ATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGA 171302 ||| | || |||||| | |||||||||||||| ||||| | || ||||||||||| | Sbjct 301 ATGGTAACTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGT 242 Query 171303 TTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGT 171362 | || |||||| | ||| | || ||||| || | ||| | |||| |||| ||| Sbjct 241 TGGTTGCACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGT 182 Query 171363 ATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCA 171422 || |||| ||||| || ||| | | || || || || || ||||||||||| | ||| Sbjct 181 GTCTTAGGCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCA 122 Query 171423 GCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTT-AATGAAGGTAT 171481 ||||||||||| || ||||| || |||||||| || || || ||| || || |||||||| Sbjct 121 GCAGAAGACCCTGAATTCGAAACCTTCTACACAAAAAACAT-CTTGTTGAACGAAGGTAT 63 Query 171482 GAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGT 171541 ||||||||||| | | ||||| ||||| || || | |||||||| || || || Sbjct 62 TCGAGCATGGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq12 Length=429 Score = 156 bits (172), Expect = 5e-33 Identities = 285/415 (69%), Gaps = 2/415 (0%) Strand=Plus/Minus Query 170564 TTTTGTATTCATAGGATGGTCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGG 170623 |||||| ||| | || |||||||| | ||||| | ||||| || || || | | || Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGG 370 Query 170624 TGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTC 170683 ||| ||||| ||| || || ||||| ||||| ||||| || || || | || || Sbjct 369 TGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTC 310 Query 170684 ATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGG 170743 ||| || || || || |||||| ||||||||||||| || || || | || ||||| Sbjct 309 ATACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGG 250 Query 170744 TCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACA 170803 ||| | || ||||| ||||| || || || ||||| || || |||| || Sbjct 249 GCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCA 190 Query 170804 ACTCGGAGGTTTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCAT 170863 | | || ||| | |||| ||||||||| | ||||| | || | || || || ||||| Sbjct 189 ATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCAT 130 Query 170864 GCTCAGACAATTTGAGATCGCAGGACTTGT-AGGCATCAGACCTTACAACGCACTCGCAT 170922 ||| | || |||||| | ||| | ||| | || || | |||||||| || | |||| Sbjct 129 GCTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAGCTTC-GTCCTTACAATGCTATTGCAT 71 Query 170923 TCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTCA 170977 |||| || |||||||| ||| | | || |||||||||| ||||| || Sbjct 70 TCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACA 16 >seq213 Length=407 Score = 140 bits (154), Expect = 4e-28 Identities = 115/140 (82%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 169762 TTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCT 169821 ||||| ||||||||||||||| ||| || |||||||||||||| | ||||| ||| Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 169822 GTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 169881 |||||| | | |||||| | ||||| ||||||||||| || |||||||||||||| || Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 169882 TCAGGTACTTTCAACTTTAT 169901 || |||||||||||||| || Sbjct 99 TCGGGTACTTTCAACTTCAT 80 >seq53 Length=414 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 169533 CGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAACATCATCTCTGG 169592 |||||| ||| | ||||||||| | |||||| | | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 169593 TGCAGTTGTTCCATCATCAAA 169613 |||||||||||| | ||||| Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579041997385440