Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq3161 360 2e-94 seq1947 340 2e-88 seq12 219 5e-52 seq213 109 6e-19 seq2164 100 3e-16 seq53 87.8 2e-12 >seq3161 Length=578 Score = 360 bits (398), Expect = 2e-94 Identities = 317/394 (80%), Gaps = 1/394 (0%) Strand=Plus/Minus Query 168451 GCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCC 168510 || |||||||| ||||| ||||| ||||| | | || || ||||| | |||||| Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 168511 CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCAT 168570 ||| |||||||||||||| |||||||||||||| |||||||| || || || || Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 168571 GGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCAC 168630 |||||||| |||||| | ||||||||||||||||||||||||||||| || || | ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 168631 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACG 168690 ||||||||||||||||||||||| || || ||||||||||| || ||||| |||| || Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 168691 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 168750 |||||||||||||| ||||||||||||||||||||||| | |||| ||| |||||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 168751 GTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCAT 168810 || | ||||| |||| || | | ||||| ||| || ||||||||||| ||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 168811 GAGCGTAACGCACACAACTTCCCACTCGATCTTG 168844 ||||||||||| |||||||||||||| || |||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGA-CTTG 178 >seq1947 Length=534 Score = 340 bits (376), Expect = 2e-88 Identities = 394/531 (74%), Gaps = 0/531 (0%) Strand=Plus/Minus Query 169769 TTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTC 169828 ||||| || |||||| || | ||||||||| | ||| | | ||| | ||||| ||| Sbjct 532 TTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTC 473 Query 169829 CACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCA 169888 ||||||||||| | || || ||||||||||||||||| || || | || || | ||| Sbjct 472 CACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCA 413 Query 169889 TTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAG 169948 | |||| ||| || ||||| | ||||| |||||||| ||| |||||| || || Sbjct 412 CTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGT 353 Query 169949 GCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 170008 ||||| || ||| ||||| || | || |||| |||||||| || |||||||| ||| Sbjct 352 GCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACT 293 Query 170009 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCAT 170068 |||||||| |||||||| |||||||| || | || || ||||||||||||||| | || Sbjct 292 GCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCAC 233 Query 170069 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGC 170128 || |||||| | ||||| || || | |||||||||| ||||||| | | ||| Sbjct 232 TTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGC 173 Query 170129 CTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGAT 170188 || || || || | |||||||| || ||||| ||| ||||| | ||||||||||| Sbjct 172 CTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGAC 113 Query 170189 CCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGG 170248 || ||||| || ||||||||||| ||||||||| | ||||| ||||| |||| |||||| Sbjct 112 CCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGG 53 Query 170249 TTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTT 170299 |||| || || || ||||| ||||| | | ||||| || || ||| Sbjct 52 ATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq12 Length=429 Score = 219 bits (242), Expect = 5e-52 Identities = 305/421 (72%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 169343 TTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGA 169402 ||||| ||| ||||||||||||| | || ||| | || || |||||||| | || Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 169403 GGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGGTACACCCACGGACTCGCT--TCCA 169460 || ||| | || || || | || || || || |||||||| ||||| | || | || Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 169461 GTTACTTAGAAGGCGCTAACTTCCTCACTGCTGC--TGTCAGTACACCTGCTGACGCTAT 169518 ||| ||||||| |||||| | || || || ||||| || || || || || Sbjct 308 --TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCA--ACTCCAGCAAACAGCAT 253 Query 169519 GGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTG 169578 ||| || ||| ||||||| |||||||| ||||| || ||||| || ||| || ||||| Sbjct 252 GGGGCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTG 193 Query 169579 TCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTT 169638 |||||||||||||| |||| ||||||||| ||||||||||| || || | ||||| || Sbjct 192 CCAATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTT 133 Query 169639 CATGCTTAGGCAGTTTGAATTGGCACG-TCTTATTGGCATCCGTCCTTATAATGCTATTG 169697 |||||| | |||||||| | ||||| ||| || | |||||||| |||||||||| Sbjct 132 CATGCTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAGC-TTCGTCCTTACAATGCTATTG 74 Query 169698 CATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGT 169757 ||||||| | || || || || || || ||| || | ||||| || || ||||| | Sbjct 73 CATTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAAT 14 Query 169758 C 169758 | Sbjct 13 C 13 >seq213 Length=407 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 168223 TTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCA 168282 |||||||||||||| |||||| ||| || |||||||||||||| || || || | ||| Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 168283 GTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATC 168342 |||||| | | || || ||||||||||| ||||| || | |||||||| || || Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 168343 TCAGGAACATTCAACTACAT 168362 || || || ||||||| ||| Sbjct 99 TCGGGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 100 bits (110), Expect = 3e-16 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 168091 TTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTC 168150 || || || || |||||||| || ||||| || || ||| | || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 168151 CAACTAGTAGTCTTTCACTTCCTCATCGGTATCT-ATGCATACATGGGACGTGAATGGGA 168209 |||||| | || | |||||| || | || |||| ||| |||||||| ||||| ||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 168210 ACTTTCATATCGTT 168223 |||||| | |||| Sbjct 212 ACTTTCTTTCCGTT 225 >seq53 Length=414 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 167994 CGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGG 168053 |||||| ||||||||||| || ||||||| || | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 168054 TGCAGTTGTCCCTTCTTCTAA 168074 ||||||||| ||| |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574304194916280