Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq3161 423 2e-113 seq1947 361 6e-95 seq12 257 2e-63 seq2164 134 2e-26 seq213 122 1e-22 seq4603 91.5 2e-13 seq1029 91.5 2e-13 >seq3161 Length=578 Score = 423 bits (468), Expect = 2e-113 Identities = 327/389 (84%), Gaps = 0/389 (0%) Strand=Plus/Minus Query 164373 GCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCC 164432 |||||||||||||| |||| ||||| || || | |||||||| || || | || || Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 164433 CAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCAC 164492 ||| |||||||||||| ||||||||||||||||| |||||||||||||| || ||| Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 164493 GGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCAC 164552 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 164553 TTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACG 164612 ||||||||||||||||||||||| ||||| ||||||||||| || |||||| | || || Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 164613 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 164672 |||||||||||||| ||||||||||||||||||||||| | | || ||| |||||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 164673 GTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCAC 164732 || |||||||||||| ||| | ||||||| ||| || ||||||||||| |||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 164733 GAGCGTAACGCTCACAACTTCCCTCTGGA 164761 ||||||||||||||||||||||| || || Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGA 182 >seq1947 Length=534 Score = 361 bits (400), Expect = 6e-95 Identities = 402/534 (75%), Gaps = 2/534 (0%) Strand=Plus/Minus Query 165654 TTTTCGCTCC-ATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGA 165712 |||| || || | |||| || || || ||||||||| | ||| | |||||| | ||||| Sbjct 534 TTTTTGCACCTAGCTTT-GGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGG 476 Query 165713 TTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGT 165772 ||||| |||||||| | || || || || ||||||||||| || || | | || | | Sbjct 475 TTCCACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCT 416 Query 165773 GCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAC 165832 ||| | |||| ||| || ||||| | ||||| ||||| || |||| | ||||||| || Sbjct 415 GCACTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGAT 356 Query 165833 GATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTT 165892 | |||||| || ||| || || | ||||||| | ||||| |||||||| ||||| Sbjct 355 GGTGCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTA 296 Query 165893 ACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTG 165952 |||||||||||||||||||| |||||||| || | || || ||| ||| | |||||| Sbjct 295 ACTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTG 236 Query 165953 CATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATT 166012 || ||||| ||||| |||||||| || | |||||||||| ||| | || ||| | | Sbjct 235 CACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTA 176 Query 166013 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAA 166072 || || || || ||| | |||||||||||||| || || |||||||| | ||||||||| Sbjct 175 GGCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAA 116 Query 166073 GACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCT 166132 ||||| || || |||||||||||||| |||||||| | ||||| |||||| |||| || Sbjct 115 GACCCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCA 56 Query 166133 TGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTT 166186 ||| |||| | || || || || || || |||| |||||||| || ||| Sbjct 55 TGGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq12 Length=429 Score = 257 bits (284), Expect = 2e-63 Identities = 317/433 (73%), Gaps = 8/433 (2%) Strand=Plus/Minus Query 165229 TTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGG 165288 ||| || || |||||||||||||| | || ||||| || ||||||||||| | || Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGG 370 Query 165289 CGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTC 165348 || ||| |||| || || ||||||| || |||||| || ||||| || |||||||| Sbjct 369 TGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTC 310 Query 165349 CTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGG 165408 || || || ||| ||||| | || || ||||| || ||||||||| || ||||| Sbjct 309 ATACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGG 250 Query 165409 TCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCA 165468 ||||| | || | || ||||| || ||||||||||| || ||| | ||| ||| Sbjct 249 GCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCA 190 Query 165469 ACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCAT 165528 | | || || || ||| | ||||| || || || || ||||||||||||||||| ||||| Sbjct 189 ATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCAT 130 Query 165529 GCTTCGTCAGTTTGAATTAGCACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTG 165584 ||| ||||||||||| | ||||| || ||| | ||||| ||||||||||||| Sbjct 129 GCTGCGTCAGTTTGAGCTTGCACG----CTCTGTAAAGCTTCGTCCTTACAATGCTATTG 74 Query 165585 CGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAAT 165644 | ||||| | || ||||| || || ||| || || | ||||| ||||| || |||| Sbjct 73 CATTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAAT 14 Query 165645 CGAGTTGGTTTTT 165657 | |||||||||| Sbjct 13 CAGGTTGGTTTTT 1 >seq2164 Length=396 Score = 134 bits (148), Expect = 2e-26 Identities = 111/133 (83%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 164013 TTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTC 164072 || ||||| ||||||||||| || || || || ||||||||||||||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 164073 CAACTTGTCGTCTTCCACTTCCTGATCGGTATCT-ATGCATACATGGGTCGTGAGTGGGA 164131 ||||| |||| | ||||||| | | || |||| ||| |||||||||||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 164132 ACTGTCTTACCGT 164144 ||| |||| |||| Sbjct 212 ACTTTCTTTCCGT 224 >seq213 Length=407 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 164148 GGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTC 164207 ||||||||||||||||| ||| |||||||||||||| |||||||| || | || || Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 164208 TTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCT 164267 ||| | |||| || ||||||||||||| ||||| |||| ||||| || ||||| || Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 164268 GGCACCTTCAACTACAT 164284 || || ||||||| ||| Sbjct 96 GGTACTTTCAACTTCAT 80 >seq4603 Length=650 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 164289 GTGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGC 164348 || |||||||| |||||||||||||| |||||||| ||||| ||||| || |||||||| Sbjct 80 GTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTGGT 21 Query 164349 GTATTTGGCGGTTCTCTGTT 164368 || ||||| ||||| || || Sbjct 20 GTGTTTGGTGGTTCACTTTT 1 >seq1029 Length=1000 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 ||||| |||||||| || ||| | |||||||| || |||||||||| || ||||| Sbjct 649 TTCTGTGAATGGGTTACAAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 590 Query 163845 ATGATCCCTACGCTGCTTGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163903 ||||||||||| || | | |||| | ||||| ||||| | || || || |||||||| Sbjct 589 ATGATCCCTACTCTTTTGACTGCAA-CTTCTGTATTCATTATTGCATTTGTTGCTGCTCC 531 Query 163904 CCCTGTGGACAT 163915 ||||| ||||| Sbjct 530 TCCTGTAGACAT 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556760569838040