Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq3161 322 5e-83 seq213 116 4e-21 seq53 84.2 2e-11 >seq3161 Length=578 Score = 322 bits (356), Expect = 5e-83 Identities = 322/418 (77%), Gaps = 0/418 (0%) Strand=Plus/Minus Query 169073 TTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAA 169132 ||||| |||||||| |||||| | ||||| || ||||| ||| | || ||||||||| | Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 169133 GAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCA 169192 |||||| ||| |||||||||||||||||||||||||||||| || || |||||||| Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 169193 GCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGT 169252 ||||| || ||||| ||| | |||||||||| || || ||||||||||| | | Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 169253 CTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATC 169312 |||||||||||||| || | | || || || || | ||||| || || | |||||| Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 169313 TGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAAC 169372 | ||| |||||||||||| | ||||| || ||||| ||||| || || || || | | Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 169373 GGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTA 169432 ||| | || || ||||||||| | | ||| | || ||||| |||||||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 169433 ATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATCTGCTGAGACTACAG 169490 ||||| |||||||||||||||||||||||||||||||| ||||| | ||| || ||| Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCAGTTGAAGCTCCAG 159 >seq213 Length=407 Score = 116 bits (128), Expect = 4e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 168852 TAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAG 168911 |||||||| | ||||||||| ||| ||||| || |||||||| | || || ||| | Sbjct 218 TAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTG 159 Query 168912 TATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTT 168971 ||||| | | |||||| | ||||| ||||| ||||| || |||||||| ||||| |||| Sbjct 158 TATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTT 99 Query 168972 CTGGAACATTCAACTTCAT 168990 | || || ||||||||||| Sbjct 98 CGGGTACTTTCAACTTCAT 80 >seq53 Length=414 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 168622 CGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGG 168681 |||||| ||| | ||||| ||| | ||| ||||| | || || |||||||||||||| || Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 168682 TGCAGTTGTTCCATCTTCAAA 168702 |||||||||||| ||||||| Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564275153227680