Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3161 318 7e-82 seq1947 246 4e-60 seq12 187 3e-42 seq213 113 5e-20 >seq3161 Length=578 Score = 318 bits (352), Expect = 7e-82 Identities = 313/404 (77%), Gaps = 0/404 (0%) Strand=Plus/Minus Query 172402 TTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCA 172461 |||||||||||||||||||| || || || || ||||| ||| | || || ||||| Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 172462 GAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCA 172521 ||||| ||| || ||||||||||| |||||||||||||| |||||||| || || Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 172522 GCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGT 172581 ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| | | Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 172582 CTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATC 172641 |||||||||||||| || | | ||||| || || | ||||| || || | |||||| Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 172642 TGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAAC 172701 | ||| ||||||||||||||||||||||||||||||||||| || || || || || | Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 172702 GGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTT 172761 ||| | | || ||||||||| | | ||| | || ||||||||||||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 172762 ATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTC 172805 ||||| || | || || |||||||||||| ||||| | || || Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATC 173 >seq1947 Length=534 Score = 246 bits (272), Expect = 4e-60 Identities = 386/552 (70%), Gaps = 23/552 (4%) Strand=Plus/Minus Query 173413 TTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTC 173472 || |||||| || ||||| || |||||||| |||| ||| | ||| | ||||| ||| Sbjct 532 TTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTC 473 Query 173473 CACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCA 173532 |||||| ||| | || || || |||||||||||||| || || | |||| | ||| Sbjct 472 CACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCA 413 Query 173533 TTACTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAA 173592 | || ||||| |||||||| |||||||| ||||||| ||| |||||| Sbjct 412 CTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGA---------- 363 Query 173593 TATACTGAAGGTAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAA 173652 || || | | | ||| | || ||| | || || ||||||| |||| ||| Sbjct 362 -----TGGAGAT--GGTGCAAAC----ACATTCCGTGCGTTCAATCCTACTCAGGCTGAA 314 Query 173653 GAAACTTATAGTATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTT 173712 || || || |||| | || || ||| | |||||||||||||| ||||| | ||||| Sbjct 313 GAGACCTACTCTATGGTAACTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTC 254 Query 173713 TCAAACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACA 173772 || ||||| | | || |||||| ||||| | || || || || | ||| | |||| Sbjct 253 TCTAACAAGCGTTGGTTGCACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATG 194 Query 173773 TCATCCATAGGTATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAA 173832 | || ||| || |||| || || || ||| | | || || ||||| || |||||| Sbjct 193 AGTGCTATTGGTGTCTTAGGCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAA 134 Query 173833 GAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTT 173892 ||||| | ||||||||||| || || ||||| || |||||||| || || || ||| || Sbjct 133 GAGATTCGCGCAGCAGAAGACCCTGAATTCGAAACCTTCTACACAAAAAACAT-CTTGTT 75 Query 173893 -AATGAAGGTATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATT 173951 || |||||||| ||||||||||| | || ||| || ||||| || || | ||||| Sbjct 74 GAACGAAGGTATTCGAGCATGGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATT 15 Query 173952 TCCAGAAGAAGT 173963 || || || || Sbjct 14 CCCTGAGGAGGT 3 >seq12 Length=429 Score = 187 bits (206), Expect = 3e-42 Identities = 292/415 (70%), Gaps = 2/415 (0%) Strand=Plus/Minus Query 172986 TTTCGTATTCATCGGATGGTCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGG 173045 ||| || ||| | || |||||||| | ||||| | ||||| ||||| ||| | | || Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGG 370 Query 173046 TGGTTGGTTCTTAGGAACTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTC 173105 ||| ||||| |||||| || ||||| ||||| ||||| || || || | ||| ||| Sbjct 369 TGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTC 310 Query 173106 ATATCTTGAAGGAGCAAACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGG 173165 ||| || ||||| ||||| |||||||||||||| || || || | || ||||| Sbjct 309 ATACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGG 250 Query 173166 TCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACA 173225 ||| | || ||||| ||||| || || || ||||| ||| ||| |||| || Sbjct 249 GCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCA 190 Query 173226 ACTCGGAGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCAT 173285 | | || || || |||| ||||||||| | ||||| | || | || || || ||||| Sbjct 189 ATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCAT 130 Query 173286 GCTCCGTCAGTTTGAGATCGCAGGACTTGT-AGGCATCAGACCTTACAACGCACTCGCAT 173344 ||| |||||||||||| | ||| | ||| | || || | |||||||| || | |||| Sbjct 129 GCTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAGCTTC-GTCCTTACAATGCTATTGCAT 71 Query 173345 TCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTTTAATCTACCCACTAGGGCA 173399 |||| || |||||||| ||| | | || || ||||| || ||||| || Sbjct 70 TCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACA 16 >seq213 Length=407 Score = 113 bits (124), Expect = 5e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 ||||||||| | || ||||| |||||| || || ||||| || |||| || |||| Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | || ||| ||||||| ||||||||||| || |||||||||||||| || Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 172300 TCAGGTACGTTCAACTTTAT 172319 || ||||| |||||||| || Sbjct 99 TCGGGTACTTTCAACTTCAT 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587877791051760