Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq3161 381 7e-101 seq1947 325 4e-84 seq12 228 9e-55 seq2164 107 2e-18 seq213 104 3e-17 seq4603 89.7 6e-13 seq53 87.8 2e-12 >seq3161 Length=578 Score = 381 bits (422), Expect = 7e-101 Identities = 322/396 (81%), Gaps = 0/396 (0%) Strand=Plus/Minus Query 162973 GCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCA 163032 |||||||||||||| ||||| || || || || ||||||| || ||||| | || || Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 163033 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCAT 163092 ||| ||||||||||||||||||||||||||| || |||||||| || || || || Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 163093 GGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCAC 163152 |||||||| |||||| | ||||||||||| || |||||||||||||| ||||| | ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 163153 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACC 163212 ||||||||||||||||||||||| || || ||||||||||| || ||||| | || ||| Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 163213 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 163272 |||||||||||||| ||||||||||||||||||||||| | |||| ||| |||||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 163273 GTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCAC 163332 || | ||||| |||| ||| | | |||||||| | ||||||||||| |||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 163333 GAGCGCAATGCTCACAACTTCCCACTTGACCTGGCA 163368 ||||| || ||||||||||||||||| ||| ||||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGACTTGGCA 175 >seq1947 Length=534 Score = 325 bits (360), Expect = 4e-84 Identities = 383/518 (74%), Gaps = 0/518 (0%) Strand=Plus/Minus Query 164095 TTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACT 164154 ||||| ||||| ||||||||| | ||| || | ||| | ||||| || || |||||||| Sbjct 520 TTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTCCACAACTGGACA 461 Query 164155 TTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCT 164214 | ||||| ||||| |||||||| || ||||| | |||| | ||| | || | ||| Sbjct 460 CTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCACTTCTTTGTGCA 401 Query 164215 ATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTT 164274 ||||| || | |||||||| || || ||| |||||||||||| |||||||| || Sbjct 400 ATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGTGCAAACACATTC 341 Query 164275 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 164334 ||||| || | || |||| |||||||| || |||||||| ||||||||||| ||| Sbjct 340 CGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACTGCAAACCGTTTC 281 Query 164335 TGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTG 164394 ||||| |||||||| || || || || ||||||||||| ||| | || || |||||| | Sbjct 280 TGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCACTTCTTCATGCTT 221 Query 164395 TTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAAT 164454 ||||| || || | ||||| |||| ||||||| | | ||||| || || || Sbjct 220 TTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGCCTAGCGCTAAAC 161 Query 164455 CTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAG 164514 | |||||||| || || || |||||||||| | ||||||||||| ||||| ||||| Sbjct 160 TTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGACCCTGAATTCGAA 101 Query 164515 ACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTT 164574 || ||||| || || |||||||| ||||||||||| | || |||||| | || | Sbjct 100 ACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGGATGGCGGCTCAA 41 Query 164575 GACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGT 164612 ||||||||| ||| |||| ||||| || || || Sbjct 40 GACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq12 Length=429 Score = 228 bits (252), Expect = 9e-55 Identities = 310/430 (72%), Gaps = 2/430 (0%) Strand=Plus/Minus Query 163656 TTTCGTATTTATTGGTTGGTCTGGATTACTACTTCTTCCCACTGCTTATATGGCAATTGG 163715 ||| || || ||||||||||||| || |||||| | || |||||| | || | || Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGG 370 Query 163716 TGGCTGGCTTACTGGTACAACTTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTC 163775 ||||||| |||| || || |||||||| || || |||||||| || || | |||| ||| Sbjct 369 TGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTC 310 Query 163776 CTATCTTGAGGGTGCTAATTTTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGG 163835 || || || ||| || || | ||||| || |||||||| || || || ||||| Sbjct 309 ATACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGG 250 Query 163836 TCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCA 163895 ||||| | || | || ||||| || |||||||| || || ||| || ||| ||| Sbjct 249 GCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCA 190 Query 163896 ACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCAT 163955 | | || || || |||| ||||| || || || || || || ||||| ||||| ||||| Sbjct 189 ATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCAT 130 Query 163956 GCTTCGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAGACCCTACAATGCGATTGCTT 164014 ||| || || ||||| ||||| ||| ||| | || | || |||||||| ||||| | Sbjct 129 GCTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAGCTTC-GTCCTTACAATGCTATTGCAT 71 Query 164015 TCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAA 164074 |||| | || || || || |||||| ||| || | ||||| ||||| || |||||| Sbjct 70 TCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATCAG 11 Query 164075 GTTGGTTCTT 164084 ||||||| || Sbjct 10 GTTGGTTTTT 1 >seq2164 Length=396 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 162613 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 162672 || || || || |||||||| || ||||| || || ||||| || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 162673 CAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAA 162732 ||||| | || | ||||||| | | ||||||| ||||||||| ||||| |||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 162733 CTCTCTTACCGT 162744 || |||| |||| Sbjct 213 CTTTCTTTCCGT 224 >seq213 Length=407 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 162748 GGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTC 162807 ||||||||||| |||||| ||||| ||||||||||| |||||||| || | || || Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 162808 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGT 162867 ||| | |||| || ||||||||||||| ||||| |||| ||||| | || || Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 162868 GGTACATTCAACTACAT 162884 ||||| ||||||| ||| Sbjct 96 GGTACTTTCAACTTCAT 80 >seq4603 Length=650 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 162887 TTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAG 162946 |||| |||||||| ||||||||||| || ||||| || ||||||||| | ||||| || | Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 162947 GTGTCTTCGGTGGTTCACTGTT 162968 |||| || ||||||||||| || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq53 Length=414 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 162516 CGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGG 162575 |||||| ||||||||||| || ||||||| || | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 162576 TGCAGTTGTTCCATCTTCCAA 162596 |||||||||||| |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557419575448200