Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq1947 369 4e-97 seq3161 269 3e-67 seq12 242 4e-59 seq213 125 8e-24 seq2164 107 2e-18 seq1029 93.3 5e-14 seq53 93.3 5e-14 seq4603 89.7 6e-13 >seq1947 Length=534 Score = 369 bits (408), Expect = 4e-97 Identities = 403/533 (76%), Gaps = 2/533 (0%) Strand=Plus/Minus Query 168943 TTTTCGCTCC-ATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGA 169001 |||| || || | |||| || || | ||||||||||| ||| | |||||| | ||||| Sbjct 534 TTTTTGCACCTAGCTTT-GGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGG 476 Query 169002 TTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGA 169061 ||||| ||||||||||| || || || || ||||||||||| || || | || |||| Sbjct 475 TTCCACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCT 416 Query 169062 GCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAA 169121 || | |||| ||| |||||||| | ||||| ||||| || |||| | ||||||| || Sbjct 415 GCACTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGAT 356 Query 169122 CAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTT 169181 ||||| || ||| || || | ||||||| || |||||||| || ||||| Sbjct 355 GGTGCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTA 296 Query 169182 ACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTG 169241 |||||||||||||||||||| ||||||||||| | || ||| ||| ||| | |||||| Sbjct 295 ACTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTG 236 Query 169242 CATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATT 169301 || ||||| ||||| |||||||| || | |||||||||| ||| | || ||| | | Sbjct 235 CACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTA 176 Query 169302 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAA 169361 || || || || ||| | |||||||||||||| ||||| |||||||| | ||||||||| Sbjct 175 GGCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAA 116 Query 169362 GATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCA 169421 || || || || || || |||||||| || |||||| | |||||||||||| |||| ||| Sbjct 115 GACCCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCA 56 Query 169422 TGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGT 169474 ||| | || || || || || || || || |||| ||||||||||| || Sbjct 55 TGGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq3161 Length=578 Score = 269 bits (298), Expect = 3e-67 Identities = 288/390 (74%), Gaps = 0/390 (0%) Strand=Plus/Minus Query 167676 GCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCC 167735 |||||||||||||| |||| || || || || | |||||||| || || | || || Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 167736 CAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCAT 167795 ||| |||||||||||||||||| |||||||| || || ||||| || ||||| || Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 167796 GGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCAC 167855 |||||||| ||||| || |||||||||||||| || ||||||||||| || || || ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 167856 TTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNN 167915 |||||| | || ||||||||||| ||||||||||||| Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 167916 NNNNNATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAG 167975 ||||||||| |||||||||||||||||||||||| | |||| | ||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 167976 GTTCTGCCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCAC 168035 || | ||||||| ||| | ||||||||||| || ||||||||||| |||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 168036 GAGCGTAATGCTCACAACTTCCCTCTCGAC 168065 |||||||| |||||||||||||| || ||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq12 Length=429 Score = 242 bits (268), Expect = 4e-59 Identities = 314/433 (73%), Gaps = 8/433 (2%) Strand=Plus/Minus Query 168518 TTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGG 168577 ||| || || |||||||||||||| | || ||||| || ||||||||||| | || Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGG 370 Query 168578 CGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTC 168637 || ||| |||| || || ||||||| || |||||| || ||||| || |||||||| Sbjct 369 TGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTC 310 Query 168638 CTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGG 168697 || || || || ||||| | || || ||||| ||||||||| | ||||| Sbjct 309 ATACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGG 250 Query 168698 TCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCA 168757 ||||| | || | || ||||| || ||||| ||||| || ||| ||||||| || Sbjct 249 GCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCA 190 Query 168758 ACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCAT 168817 | | || || || ||| | ||||| || || || || |||||||||||||| || ||||| Sbjct 189 ATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCAT 130 Query 168818 GCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTG 168873 ||| ||||||||||| || ||||| || ||| | ||||| ||||||||||||| Sbjct 129 GCTGCGTCAGTTTGAGCTTGCACG----CTCTGTAAAGCTTCGTCCTTACAATGCTATTG 74 Query 168874 CGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAAT 168933 | ||||| | || ||||| || || ||| || || | ||||| ||||| || |||| Sbjct 73 CATTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAAT 14 Query 168934 CGAGTTGGTTTTT 168946 | |||||||||| Sbjct 13 CAGGTTGGTTTTT 1 >seq213 Length=407 Score = 125 bits (138), Expect = 8e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 167451 GGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTA 167510 ||||||||||| |||||| ||| || |||||||| ||||| || || || |||||||| Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 167511 TTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCT 167570 ||| || |||| || ||||||||||||| ||||| |||| ||||| || || || || Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 167571 GGTACATTCAACTACAT 167587 ||||| ||||||| ||| Sbjct 96 GGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 167316 TTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTC 167375 || || || || |||||||| || | || ||||| ||| | ||||| |||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 167376 CAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAA 167435 ||||| | |||| ||||||| | | ||||||| ||| |||||||||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 167436 CTCTCTTACCGT 167447 || |||| |||| Sbjct 213 CTTTCTTTCCGT 224 >seq1029 Length=1000 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| || || |||||||| |||||| | ||||| || || | |||||||| || ||||| Sbjct 650 CTTCTGTGAATGGGTTACAAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCT 591 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 ||||||||||| | | | |||| | ||||| ||||| || || || || | ||||| Sbjct 590 AATGATCCCTACTCTTTTGACTGCAA-CTTCTGTATTCATTATTGCATTTGTTGCTGCTC 532 Query 167206 CTCCTGTGGACAT 167218 ||||||| ||||| Sbjct 531 CTCCTGTAGACAT 519 >seq53 Length=414 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 167219 CGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGG 167278 ||| |||||||| |||||||| ||||||| || | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 167279 TGCAGTTGTTCCTTCTTCTAA 167299 ||||||||||||| |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 >seq4603 Length=650 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 167590 TTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTG 167649 |||| |||||||| |||||||||||||| |||||||| ||||| ||||| || ||||||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 167650 GCGTATTCGGCGGTTCTCTGTT 167671 | || || || ||||| || || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560442683708400