Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq3161 367 2e-96 seq4603 104 3e-17 seq2164 84.2 3e-11 seq53 84.2 3e-11 >seq3161 Length=578 Score = 367 bits (406), Expect = 2e-96 Identities = 322/401 (80%), Gaps = 0/401 (0%) Strand=Plus/Minus Query 215876 TTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAA 215935 ||||| ||||||||||||||| | || || || ||||| ||| | || || |||||| | Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 215936 GAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCT 215995 |||||| ||| |||||||||||||| ||||| || ||||| |||||||| || ||| Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 215996 GCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGT 216055 |||||||||||||||||||| || |||||||||||||| || ||||||||||| | | Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 216056 CTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTC 216115 ||||||||||||||||| |||| ||||| || |||||||| ||||| | ||| || Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 216116 TCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCT 216175 || || ||||| ||||||||||||||||||||||||||||||||||| || ||| | Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 216176 GGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTA 216235 ||| || || ||||||| ||| | | ||| | || || |||||||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 216236 ATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGC 216276 |||||||||||||||||||||||||||||| |||||||||| Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGC 176 >seq4603 Length=650 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 215796 TTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTG 215855 |||||||||| |||||||||||||| || |||||||| ||||||||| ||||||| |||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 215856 GTGTCTTCGGTGGTTCA 215872 |||| || ||||||||| Sbjct 22 GTGTGTTTGGTGGTTCA 6 >seq2164 Length=396 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 215522 TTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTC 215581 || |||||||| |||||||| || || | ||||||||||| ||||| ||||| |||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 215582 CAACTGGTTATCTTCCACTTCCTCATTGGTAT-TTCTGCATACTGCGGAAGACAGTGGGA 215640 ||||| | | | ||||||| || | || || | |||| ||| || | ||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 215641 ACTTTCTT 215648 |||||||| Sbjct 212 ACTTTCTT 219 >seq53 Length=414 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 215425 CGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGG 215484 |||||| ||| | || ||||| |||||||| || | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 215485 TGCTGTTGTACCTAGTTCAAA 215505 ||| ||||| |||| |||||| Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744861884749680