Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq3161 401 8e-107 seq1947 347 1e-90 seq12 219 5e-52 seq2164 132 6e-26 seq213 120 4e-22 seq4603 100 3e-16 seq1029 87.8 2e-12 >seq3161 Length=578 Score = 401 bits (444), Expect = 8e-107 Identities = 326/394 (83%), Gaps = 1/394 (0%) Strand=Plus/Minus Query 182382 GCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCA 182441 |||||||||||||| ||||| || || || || ||||||| || |||||| | || || Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 182442 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCAT 182501 ||| ||||||||||||||||||||||||||| || || ||||| ||||| || || Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 182502 GGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCAC 182561 || ||||| |||||| | |||||||||||||| |||||||||||||| ||||| | ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 182562 TTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACG 182621 ||||||||||||||||||||||| ||||| ||||||||||| || |||||| |||| || Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 182622 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 182681 |||||||||||||| ||||||||||||||||||||||| | |||| ||| |||||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 182682 GTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCAT 182741 || | |||||||||| || | | ||||||||| || ||||||||||| ||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 182742 GAGCGTAACGCACACAACTTCCCACTAGATCTTG 182775 ||||||||||| ||||||||||||||||| |||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGA-CTTG 178 >seq1947 Length=534 Score = 347 bits (384), Expect = 1e-90 Identities = 397/531 (75%), Gaps = 2/531 (0%) Strand=Plus/Minus Query 183643 TTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTC 183702 ||||||||||| || || || || |||||||| | ||| | | ||| | || || ||| Sbjct 532 TTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTC 473 Query 183703 CACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCA 183762 ||||||||||| | ||||| ||||| |||||||| || ||||| | |||||| ||| Sbjct 472 CACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCA 413 Query 183763 CTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAA 183822 || || |||| || ||||| | ||||| ||||| || ||| |||||||||||| Sbjct 412 CTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGT 353 Query 183823 GCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACA 183882 |||||||||||| || || || | ||||| | |||||||| || |||||||| || Sbjct 352 GCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACT 293 Query 183883 GCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCAC 183942 || || |||||||||||||| ||||| || || || || || ||||||||||||||| Sbjct 292 GCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCAC 233 Query 183943 TTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGG 184002 ||||| ||| | |||||||| || | ||||||||| | | ||||||| || | || Sbjct 232 TTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGC 173 Query 184003 CTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGAT 184062 || || || || | ||||||||||| || || ||||||||| | ||||||||||| Sbjct 172 CTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGAC 113 Query 184063 CCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTT-AATGAAGGACTACGTGCATG 184121 || ||||| || || ||||||||||| ||||| ||| || || ||||| | || ||||| Sbjct 112 CCTGAATTCGAAACCTTCTACACAAAAAACAT-CTTGTTGAACGAAGGTATTCGAGCATG 54 Query 184122 GTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGT 184172 | | || || || || ||||| || || || |||| || |||||||| Sbjct 53 GATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq12 Length=429 Score = 219 bits (242), Expect = 5e-52 Identities = 298/416 (72%), Gaps = 0/416 (0%) Strand=Plus/Minus Query 183217 TTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGC 183276 ||||| || || || |||||||| | |||||| | || |||||||||||| | || Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 183277 GGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCC 183336 || ||| |||| || || |||| || || |||||| || || || | || ||| Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 183337 TATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGT 183396 || || |||||| ||||| | || ||||| || || || || || || ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 183397 CATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAA 183456 ||||| | || || || ||||| || ||| ||||||| ||||| ||| ||||||||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 183457 CTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATG 183516 | || || || |||| ||||| || || || ||||| || ||||| ||||| |||||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 183517 CTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTC 183576 || || |||||||| ||||| |||| | | |||||||||||||||||||| ||| Sbjct 128 CTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAGCTTCGTCCTTACAATGCTATTGCATTC 69 Query 183577 TCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTC 183632 || | || || || || || || ||| ||| | |||||||| || || || || Sbjct 68 TCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATC 13 >seq2164 Length=396 Score = 132 bits (146), Expect = 6e-26 Identities = 108/131 (82%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 182022 TTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 182081 || ||||| || ||||||||||| ||||| || || ||||| || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 182082 CAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCCTACATGGGACGTGAGTGGGAA 182141 ||||| | |||| ||||||| | | ||||||| | ||||||||| |||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 182142 CTTTCTTACCG 182152 ||||||| ||| Sbjct 213 CTTTCTTTCCG 223 >seq213 Length=407 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 182154 TTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCT 182213 |||||||||||||| |||||| |||||| |||||||| ||||| || || || ||||| Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 182214 GTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATC 182273 |||||| | |||| || ||||||||||||| ||||| || | ||||| || || || Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 182274 TCAGGAACATTCAACT 182289 || || || ||||||| Sbjct 99 TCGGGTACTTTCAACT 84 >seq4603 Length=650 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 182298 GTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGT 182357 ||||||||||||||||||||||| |||||||| || ||||||||| | ||||| || ||| Sbjct 80 GTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTGGT 21 Query 182358 GTATTCGGTGGTTCACTGTT 182377 || || ||||||||||| || Sbjct 20 GTGTTTGGTGGTTCACTTTT 1 >seq1029 Length=1000 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 ||||| || ||||||||| || | || || || || | |||||||||||||| || Sbjct 649 TTCTGTGAATGGGTTACAAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 590 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| ||||| ||| | |||| | ||||| ||||| |||| || || || || || Sbjct 589 ATGATCCCTACTCTTTTGACTGCAA-CTTCTGTATTCATTATTGCATTTGTTGCTGCTCC 531 Query 181913 TCCTGTCGATAT 181924 |||||| || || Sbjct 530 TCCTGTAGACAT 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611515618495800