Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq3161 334 9e-87 seq1947 334 9e-87 seq12 237 2e-57 seq2164 111 2e-19 seq213 87.8 2e-12 seq4603 82.4 9e-11 seq53 82.4 9e-11 >seq3161 Length=578 Score = 334 bits (370), Expect = 9e-87 Identities = 320/404 (79%), Gaps = 12/404 (3%) Strand=Plus/Minus Query 165344 TTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGA-A 165402 ||||||| || ||||| || | || ||||| || || |||| || || ||||| | Sbjct 578 TTTTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGA 519 Query 165403 ACAGAGAGTCAG--AACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCG 165460 || || || | ||| ||||| ||||| || ||||||||||| || || ||||| | Sbjct 518 AC---GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTG 462 Query 165461 TCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCC 165520 | ||||| ||||| ||||| |||||||| || ||||||||||| || |||||||| || | Sbjct 461 TTGCTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTC 402 Query 165521 GTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTG 165580 |||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 401 GTTCTCTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTG 342 Query 165581 GTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATA 165640 || | ||||||||||||||||| |||||||||||||||||||||||| | ||||| Sbjct 341 GTATCTCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACT 282 Query 165641 GTC-AGAAC--AAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTA 165697 || || | ||||| | ||||||| |||| | | ||||||||| || |||| Sbjct 281 CTCAAGGTCGTGTAATCAAC---ACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTA 225 Query 165698 TGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGAC 165741 ||||||| ||||| ||||||||||||||||||||||| || ||| Sbjct 224 TGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq1947 Length=534 Score = 334 bits (370), Expect = 9e-87 Identities = 396/534 (74%), Gaps = 2/534 (0%) Strand=Plus/Minus Query 166621 TTTTCGCTCC-ATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGA 166679 |||| || || | |||| || || | ||||||||||| ||| |||| ||| | ||||| Sbjct 534 TTTTTGCACCTAGCTTT-GGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGG 476 Query 166680 TTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGT 166739 ||||||||||||||||| ||||| || || ||||||||||| || || | | || | | Sbjct 475 TTCCACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCT 416 Query 166740 GCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAA 166799 ||| | |||| ||| || ||||| | ||||| |||||||| |||| | ||||||| || Sbjct 415 GCACTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGAT 356 Query 166800 CAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTT 166859 ||||| || ||| || ||| | ||||||| | ||||| ||||| || ||||| Sbjct 355 GGTGCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTA 296 Query 166860 ACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTG 166919 || |||||||| | ||||| |||||||| || | || || ||| ||| | |||||| Sbjct 295 ACTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTG 236 Query 166920 CATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATT 166979 || ||||| ||||| |||||||| || | ||||| |||| ||| | || ||| | | Sbjct 235 CACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTA 176 Query 166980 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAG 167039 || || || || ||| | |||||||||||||| ||||| ||||| | | |||||||| Sbjct 175 GGCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAA 116 Query 167040 GATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCT 167099 || ||||| || ||||||||||| || || ||||| | ||||| || ||||| || | Sbjct 115 GACCCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCA 56 Query 167100 TGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTT 167153 |||||||| || || || || || || | | ||||||||||| |||||| Sbjct 55 TGGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq12 Length=429 Score = 237 bits (262), Expect = 2e-57 Identities = 312/430 (73%), Gaps = 2/430 (0%) Strand=Plus/Minus Query 166196 TTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGG 166255 ||| || || |||||||||||||| | || ||| | || ||||||||||| | || Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGG 370 Query 166256 CGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAG 166315 || ||| | || || || |||||||| || |||||| || || || | ||||| Sbjct 369 TGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTC 310 Query 166316 TTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGG 166375 || || || ||| ||||| | || || ||||| || ||||||||| | ||||| Sbjct 309 ATACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGG 250 Query 166376 TCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCA 166435 ||||| | || | || ||||| || ||||||||||| || ||| | |||||||| Sbjct 249 GCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCA 190 Query 166436 ACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCAT 166495 | | || || |||||| ||||||| ||||| || |||||||| || |||||||| ||||| Sbjct 189 ATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCAT 130 Query 166496 GCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAATCGCTT 166554 ||| || |||||||| | || || ||| ||| ||||||| |||||||| || || | Sbjct 129 GCTGCGTCAGTTTGAGCTTGCACGCTCT-GTAAAGCTTCGTCCTTACAATGCTATTGCAT 71 Query 166555 TTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGA 166614 | || | || || || || |||||| ||| || | ||||| ||||| || ||||| Sbjct 70 TCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATCAG 11 Query 166615 GTTGGTTTTT 166624 |||||||||| Sbjct 10 GTTGGTTTTT 1 >seq2164 Length=396 Score = 111 bits (122), Expect = 2e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 164992 TTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTAC 165051 || || ||||||||||||||||| | | || |||||| | |||||||||||||||||| Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 165052 CAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAA 165111 || | | || | ||||||| || | || | |||||||||||||||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 165112 CTGTCTTACCG 165122 || |||| ||| Sbjct 213 CTTTCTTTCCG 223 >seq213 Length=407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 165127 GGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTT 165186 ||||||||||||||||| ||||| || ||||| || || |||||| | || || Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 165187 TTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCT 165246 ||| | |||| || |||||||||| ||||| || |||||||| || || || || Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 165247 GGTACTTTTAACT 165259 |||||||| |||| Sbjct 96 GGTACTTTCAACT 84 >seq4603 Length=650 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 165268 GTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 165327 || |||||||| || || ||||| |||||||| || ||||||||||| || |||||||| Sbjct 80 GTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTGGT 21 Query 165328 GTATTCGGTGGATCTCTTTT 165347 || || ||||| || ||||| Sbjct 20 GTGTTTGGTGGTTCACTTTT 1 >seq53 Length=414 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 164896 GATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGT 164955 || ||||| |||||||| || | ||||||||| | ||||| |||||||||||||||||| Sbjct 80 GACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGGT 21 Query 164956 GCTGTCGTTCCGTCTTCTAA 164975 || || ||||| |||| || Sbjct 20 GCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563494583475840