Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq3161 327 1e-84 seq213 122 1e-22 seq2164 95.1 1e-14 seq4603 82.4 9e-11 >seq3161 Length=578 Score = 327 bits (362), Expect = 1e-84 Identities = 321/413 (78%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 170272 TTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAAC 170331 ||||||||||||||||||||| | ||||| || ||||| ||| | || || || || ||| Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 170332 GAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCA 170391 || || ||| ||| ||||| ||||| |||||||||||||| |||||||||||||| Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 170392 GCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGT 170451 ||||| || ||||||||| | || ||||||||||| ||| || ||||| |||| | Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 170452 CTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATT 170511 |||||||||||||||||| ||| |||||||| | |||||||| ||| | | ||||| Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 170512 TGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCT 170571 | || |||||||| |||||||| || || |||||||||||||| |||| || ||| Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTC---TGTAGTTGACTCT 280 Query 170572 ---GGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAA 170628 ||| ||| | || |||| ||| | | ||| | || ||||||||||||||| Sbjct 279 CAAGGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAA 220 Query 170629 GTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTGGCAACTGCTGA 170681 |||||||| |||||||| || |||||||||||||| ||||||||| | | ||| Sbjct 219 GTAATGCACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCAGTTGA 167 >seq213 Length=407 Score = 122 bits (134), Expect = 1e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 170050 TTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCT 170109 ||||||||||||||||||||| |||||| || ||||| ||||| |||| || ||| Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 170110 GTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATC 170169 |||||| | | || || ||||||| || || ||||||||||| ||||| ||||| || Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 170170 TCAGGTACATTTAACTTCAT 170189 || ||||| || |||||||| Sbjct 99 TCGGGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 169918 TTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTAT 169977 || || |||||||||||||| || | ||||| || ||| | || |||||||||||||| Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 169978 CAATTAGTTATCTTCCACTTCCTTATCGGAATCT-CTGCCTACATGGGTAGACAGTGGGA 170036 ||| || | | | ||||||| | | || |||| ||| |||||||||| | ||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTG-CTACATGGGTCGTGAGTGGGA 211 Query 170037 ACTATCATACCGTT 170050 ||| || | ||||| Sbjct 212 ACTTTCTTTCCGTT 225 >seq4603 Length=650 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 170194 GTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGT 170253 || |||||||| ||||||||||| ||||||||||| ||||| ||| ||| ||||||||| Sbjct 80 GTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTGGT 21 Query 170254 ATGTTCGGAGGAGCACTCTT 170273 |||| || || |||| || Sbjct 20 GTGTTTGGTGGTTCACTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582676125410400