Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq3161 304 1e-77 seq213 125 8e-24 seq2164 89.7 6e-13 seq1029 87.8 2e-12 seq53 84.2 2e-11 >seq3161 Length=578 Score = 304 bits (336), Expect = 1e-77 Identities = 312/408 (76%), Gaps = 0/408 (0%) Strand=Plus/Plus Query 83966 AACTGACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACC 84025 |||||| || | || | |||||||| || |||||||| |||||||| ||||||||||| Sbjct 169 AACTGATGCCAAGTCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACC 228 Query 84026 AAGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGAC 84085 || ||||| || | | || |||| || |||| ||||| ||| || || Sbjct 229 TAGGTTAGCACGGTTGATGATGTCACCCCAAGTGTTGATTACACGACCTTGAGAGTCAAC 288 Query 84086 AAGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGC 84145 | | ||| |||||||| || || || || || ||||||||||| | ||| ||||| Sbjct 289 TACAGACTGGTTGAAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGATACCAAGAGC 348 Query 84146 AGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATT 84205 || ||||| || ||||| || ||||| ||||| | ||| ||||| ||||||||| || Sbjct 349 AGTGAACCAGATACCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAGAACGAGAGTT 408 Query 84206 GTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATT 84265 |||||| ||||| || |||||||| |||||||| ||||| ||||| ||||||||||| || Sbjct 409 GTTGAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTT 468 Query 84266 ATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGT 84325 |||||||| |||||||||||||||||||||||| ||| || | || || ||||| Sbjct 469 GTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGTTCTCAGTAGT 528 Query 84326 TTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAA 84373 ||| ||||| ||||| ||||| || | |||||| |||||||| ||||| Sbjct 529 TTCACGGATAAGAGATGAAGTTACCAATGAACCGTGCATTGCTGAGAA 576 >seq213 Length=407 Score = 125 bits (138), Expect = 8e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 84456 ATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCG 84515 ||| ||||||| || || || || || |||||||| || || ||||| |||||||| ||| Sbjct 80 ATGAAGTTGAAAGTACCCGAAATGCCTAGTGGCATACCGTCTGAGAATGAACCTTGACCG 139 Query 84516 AAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAG 84575 | || || | | ||||||||||| || ||||||||||| ||||||||||| ||| | Sbjct 140 ATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGCG 199 Query 84576 ATCCATGGACGCATACC 84592 ||||| ||||||||||| Sbjct 200 ATCCAAGGACGCATACC 216 >seq2164 Length=396 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 84603 GAAAGTTCCCATTCACGACCCATGTA--AGCAAATGCACCAATCAGGAAGTGAAAGACAA 84660 ||||||||||| |||||||||||||| |||| |||| | | | |||||| | || | Sbjct 217 GAAAGTTCCCACTCACGACCCATGTAGCAGCAGATGC--CTAGGAAGAAGTGGCAAACGA 160 Query 84661 CAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAG 84720 ||||| ||||| ||||| || || ||||||||||| | || ||||||||||||| Sbjct 159 TTAGTTGGTAAGGACCACCGTTGTAAAGCCATTCGTCTAGTGAAGCAGCTTCCCAAATAG 100 Query 84721 GATAGAA 84727 | || || Sbjct 99 GGTAAAA 93 >seq1029 Length=1000 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 84821 GTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAA 84879 || ||| || || || || ||| |||| |||||||| ||||| ||||| ||| |||| | Sbjct 515 GTTAATGTCTACAGGAGGAGCAGCAACAAATGCAATAATGAATACAGA-AGTTGCAGTCA 573 Query 84880 GTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGG 84939 ||||| || ||||| ||| ||||||||||||| || | ||||| | |||| | Sbjct 574 AAAGAGTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTGCTTG 633 Query 84940 TGACCCAATCACAGAAG 84956 | ||||| ||||||||| Sbjct 634 TAACCCATTCACAGAAG 650 >seq53 Length=414 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 84753 GGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCA 84812 ||||| || |||||||| ||||||||||| ||||| | |||||||||| ||||| ||| Sbjct 10 GGAACAACTGCACCAGAGATGATGTTGTTGCCGTAAAGTAGAGAACCAGATACTGGTTCA 69 Query 84813 CGGATACCGTC 84823 ||||||||||| Sbjct 70 CGGATACCGTC 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571105138556280