Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq3161 233 6e-57 >seq3161 Length=578 Score = 233 bits (258), Expect = 6e-57 Identities = 296/407 (73%), Gaps = 0/407 (0%) Strand=Plus/Minus Query 26382 TTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGG 26441 ||||| | || |||||||| ||||| ||||| || ||||| ||||| || ||| Sbjct 578 TTTTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGA 519 Query 26442 AAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCG 26501 | | || || ||| || ||||| || ||||| ||||| || || || ||||| | Sbjct 518 ACGAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTG 459 Query 26502 CTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTT 26561 |||||||||| |||||||| | |||| || || || || || || ||| |||| Sbjct 458 CTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTT 399 Query 26562 CTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTA 26621 ||||||| ||||| |||||| | ||||| || ||||| || ||| | || || | |||| Sbjct 398 CTCTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTA 339 Query 26622 TCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTA 26681 ||| || |||||||| ||||| || ||||| ||||| |||||||| ||||| || | Sbjct 338 TCTCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTC 279 Query 26682 ATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAG 26741 | || |||| || |||| ||| | | ||||| |||||||| || | |||| Sbjct 278 AAGGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAG 219 Query 26742 TTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGCATCA 26788 | |||||||||||||| ||||| ||||| ||||| ||||| |||||| Sbjct 218 TAATGCACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCA 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146685295607784