Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq3161 239 1e-58 seq1029 102 2e-17 >seq3161 Length=578 Score = 239 bits (264), Expect = 1e-58 Identities = 299/410 (73%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| | | ||| | ||| |||||||||||||| ||||||||||| ||||| |||||||| Sbjct 167 TCAACTGATGCCAAGTCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 226 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 |||| || |||||||| | |||||| ||||||| || || | || | || ||| Sbjct 227 CCTAGGTTAGCACGGTTGATGATGTCACCCCAAGTGTTGATTACACGACCTTGAGAGTCA 286 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || || ||||| |||||||| || ||||| || || || ||||| || |||| || | | Sbjct 287 ACTACAGACTGGTTGAAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGATACCAAGA 346 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 || || | ||| || | | || ||||| ||||| |||||||| || | | || Sbjct 347 GCAGTGAACCAGATACCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAGAACGAGAG 406 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || ||| || |||||||| || | |||||||| || || || ||||||||| Sbjct 407 TTGTTGAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATG 466 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 || || || ||||||||||| ||||| || || ||| ||| |||||| | |||| Sbjct 467 TTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGTTCTCAGTA 526 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAA 36373 |||||||| ||||| || ||||| || | |||||||| || | ||| Sbjct 527 GTTTCACGGATAAGAGATGAAGTTACCAATGAACCGTGCATTGCTGAGAA 576 >seq1029 Length=1000 Score = 102 bits (112), Expect = 2e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 36825 ATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGT 36884 || || || ||||| ||||||||||||||||| | ||| | | ||| || ||||| Sbjct 519 ATGTCTACAGGAGGAGCAGCAACAAATGCAATAATGAATACAGAAGTTGCAGTCAAAAGA 578 Query 36885 GCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACC 36944 | |||||||||||| || |||||||| || | || |||||||| | || ||||||||| Sbjct 579 GTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTGCTTGTAACC 638 Query 36945 CAGTCACATaa 36955 || ||||| || Sbjct 639 CATTCACAGAA 649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150412251234214