Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq3161 237 5e-58 seq1029 96.9 1e-15 >seq3161 Length=578 Score = 237 bits (262), Expect = 5e-58 Identities = 275/371 (74%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 5201 TCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGG 5260 || ||||||||||||||||| || || |||||||||||||||||||| ||||| |||||| Sbjct 182 TCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGGTTAGCACGG 241 Query 5261 TTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGACTGATTG 5320 || | || || |||||||| | | | ||| ||||||||| || ||||| ||| Sbjct 242 TTGATGATGTCACCCCAAGTGTTGATTACACGACCTTGAGAGTCAACTACAGACTGGTTG 301 Query 5321 AAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATG 5380 ||||| || |||||||| || || ||||| || ||||| || | || || | ||| || Sbjct 302 AAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGATACCAAGAGCAGTGAACCAGATA 361 Query 5381 CAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCA 5440 | ||| || ||||| | ||| |||||||| || | | ||| ||||| || ||| Sbjct 362 CCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAGAACGAGAGTTGTTGAATGAAGCG 421 Query 5441 TACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCC 5500 || |||||||| || | |||||||| || || || ||||||||||| || |||||||| Sbjct 422 TATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAAGTTTCTTCT 481 Query 5501 TCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGC 5560 ||||| ||||| || || ||| ||| ||| | |||| |||||||| || || Sbjct 482 TCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGTTCTCAGTAGTTTCACGGATAAGA 541 Query 5561 GAAGAAGTAAC 5571 || ||||| || Sbjct 542 GATGAAGTTAC 552 >seq1029 Length=1000 Score = 96.9 bits (106), Expect = 1e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 6047 ATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGT 6106 ||||| || || || ||||| || ||||| | || ||| ||| |||||| || || || Sbjct 519 ATGTCTACAGGAGGAGCAGCAACAAATGCAATAATGAATACAGAAGTTGCAGTCAAAAGA 578 Query 6107 GCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACC 6166 | || ||||||| ||||||||||| || | || |||||||| | ||||| |||||| Sbjct 579 GTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTGCTTGTAACC 638 Query 6167 CAGTCACAGAA 6177 || |||||||| Sbjct 639 CATTCACAGAA 649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152606836264026