Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq3161 250 8e-62 seq1029 102 2e-17 seq2164 82.4 2e-11 >seq3161 Length=578 Score = 250 bits (276), Expect = 8e-62 Identities = 306/418 (73%), Gaps = 0/418 (0%) Strand=Plus/Plus Query 25436 CTGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAA 25495 ||| || ||| | ||||| ||||| || ||||||||||| ||||||||||| ||||| | Sbjct 159 CTGGAGCTTCAACTGATGCCAAGTCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTA 218 Query 25496 CTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGT 25555 ||||||| |||| || |||||||| | |||||| ||||||| || || | || | Sbjct 219 CTTCCATACCTAGGTTAGCACGGTTGATGATGTCACCCCAAGTGTTGATTACACGACCTT 278 Query 25556 TGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGA 25615 || ||||| || ||||| |||||||| || ||||| || || || ||||| || |||| Sbjct 279 GAGAGTCAACTACAGACTGGTTGAAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGA 338 Query 25616 CTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAAC 25675 || | ||| || | ||| || | | || ||||| ||||| |||||||| || | | Sbjct 339 TACCAAGAGCAGTGAACCAGATACCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAG 398 Query 25676 TACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCG 25735 ||| || || || ||| || |||||||| || | |||||||| || || || | Sbjct 399 AACGAGAGTTGTTGAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAG 458 Query 25736 CAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAA 25795 |||||||||| || || ||||||||||| ||||| || || ||| ||| |||||| Sbjct 459 CAACAATGTTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGT 518 Query 25796 GCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAA 25853 | |||| |||||||| ||||| || ||||| || | |||||||| || | ||| Sbjct 519 TCTCAGTAGTTTCACGGATAAGAGATGAAGTTACCAATGAACCGTGCATTGCTGAGAA 576 >seq1029 Length=1000 Score = 102 bits (112), Expect = 2e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 26305 ATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGT 26364 || || || ||||| ||||||||||||||||| | ||| | | ||| || ||||| Sbjct 519 ATGTCTACAGGAGGAGCAGCAACAAATGCAATAATGAATACAGAAGTTGCAGTCAAAAGA 578 Query 26365 GCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACC 26424 | |||||||||||| || |||||||| || | || |||||||| | || ||||||||| Sbjct 579 GTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTGCTTGTAACC 638 Query 26425 CAGTCACATAA 26435 || ||||| || Sbjct 639 CATTCACAGAA 649 >seq2164 Length=396 Score = 82.4 bits (90), Expect = 2e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 26085 AAGTTCCCATTGTCGTCCCAAGTAAGCTG-AGATGCCGATGAGAAAGTGGAACACAATAA 26143 ||||||||| | || |||| ||| || | ||||||| | || |||||| | || || | Sbjct 215 AAGTTCCCACTCACGACCCATGTA-GCAGCAGATGCCTAGGAAGAAGTGGCAAACGATTA 157 Query 26144 GTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGT 26203 |||| || || |||||||| || | ||| ||||| || | ||||||||||| || |||| Sbjct 156 GTTGGTAAGGACCACCGTTGTAAAGCCATTCGTCTAGTGAAGCAGCTTCCCAAATAGGGT 97 Query 26204 AGAA 26207 | || Sbjct 96 AAAA 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151951020037916