Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq3161 331 1e-85 seq1947 324 2e-83 seq12 215 6e-51 seq213 127 2e-24 seq2164 95.1 1e-14 seq4603 89.7 6e-13 seq53 86.0 7e-12 >seq3161 Length=578 Score = 331 bits (366), Expect = 1e-85 Identities = 314/400 (79%), Gaps = 1/400 (0%) Strand=Plus/Minus Query 163474 TTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACT 163533 ||||| |||||||| || | || || || || || ||||||| || ||||| | Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 163534 GAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCA 163593 || || ||| |||||||||||| |||||||||||||| || |||||||| ||||| Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 163594 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGT 163653 ||||| || ||||| |||||| | ||||||||||| || |||||||||||| | | Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 163654 CTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTA 163713 |||||||||||||| || ||||||||||| || || |||||||| ||||| || || | Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 163714 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 163773 ||||||||||||||||| ||||||||||||||||||||||| | |||| ||| Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 163774 GGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTT 163833 |||||||| |||||||||||| ||| | | ||||| ||| || ||||||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 163834 ATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTG 163873 ||||| ||||||||||| |||||||||||||| || |||| Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGA-CTTG 178 >seq1947 Length=534 Score = 324 bits (358), Expect = 2e-83 Identities = 391/532 (73%), Gaps = 0/532 (0%) Strand=Plus/Minus Query 165067 TTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGAT 165126 |||| || || |||||| ||||| |||||||| | ||| | | ||| | ||||| | Sbjct 534 TTTTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGT 475 Query 165127 TCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAG 165186 ||||||||||||| || ||||| ||||| ||||||||||| || || | || |||| | Sbjct 474 TCCACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTG 415 Query 165187 CATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGC 165246 || | || | ||| |||||||| | |||||||| || || | | || |||||||| Sbjct 414 CACTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATG 355 Query 165247 AGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCA 165306 ||||| || || ||||| || | || |||| |||||||| || |||||||| | Sbjct 354 GTGCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAA 295 Query 165307 CTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTC 165366 |||||||||| |||||||| |||||||| || | || || ||||||||||| ||| | | Sbjct 294 CTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGC 235 Query 165367 ATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTG 165426 | || |||||| | ||||| || || | |||||||||| ||||||| | | | Sbjct 234 ACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAG 175 Query 165427 GTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAG 165486 | || || || ||| | |||||||| || ||||| ||| ||||| | |||||||||| Sbjct 174 GCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAG 115 Query 165487 ATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTT 165546 | || ||||| || ||||||||||| ||||||||| | ||||| ||||| | || || | Sbjct 114 ACCCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCAT 55 Query 165547 GGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGT 165598 || |||| || || || || || ||||| || | ||||| || || || Sbjct 54 GGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq12 Length=429 Score = 215 bits (238), Expect = 6e-51 Identities = 308/431 (71%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 164643 TTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTGGCCATTGGC 164702 ||||| || || || |||||||| || |||||| | || |||||||| ||| | || Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 164703 GGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCC 164762 || ||| |||| || || |||| || || ||||||||| || || | || ||| Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 164763 TATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCTATGGGT 164822 || || |||||| ||||| | |||||||| || || || || || | ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 164823 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 164882 ||||| | || | || ||||| || ||| |||| || | ||| || ||||||||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 164883 CTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATG 164942 | || || || |||| || || ||||| || ||||| ||||| |||||||| |||||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 164943 CTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTA---TCCGTCCTTACAATGCTATTGCG 164999 || || ||||||||||| ||||| ||| || | | |||||||||||||||||||| Sbjct 128 CTGCGTCAGTTTGAGCTTGCACG-CTC--TGTAAAGCTTCGTCCTTACAATGCTATTGCA 72 Query 165000 TTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCC 165059 ||||| | || || || || || || || ||| | ||||| || || || || || Sbjct 71 TTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATCA 12 Query 165060 AGTTGGTTTTT 165070 |||||||||| Sbjct 11 GGTTGGTTTTT 1 >seq213 Length=407 Score = 127 bits (140), Expect = 2e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 163252 TTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCA 163311 ||||||||||| || |||||| |||||| ||||||||||| |||||||| || | || Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 163312 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATC 163371 || ||| | |||| || ||||||||||||| ||||| |||| |||||||| ||||| Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 163372 TCTGGCACATTCAACTACAT 163391 || || || ||||||| ||| Sbjct 99 TCGGGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 163120 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 163179 || || || || |||||||| || ||||| || || ||||| || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 163180 CAACTCGTAGTCTTTCACTTCCTTATCGGCATCT-ATGCATATATGGGACGTGAATGGGA 163238 ||||| | || | |||||| | | ||||||| ||| || ||||| ||||| ||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 163239 ACTTTC 163244 |||||| Sbjct 212 ACTTTC 217 >seq4603 Length=650 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 163394 TTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTG 163453 |||| |||||||| |||||||||||||| |||||||| ||||| ||| | || || |||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 163454 GTGTCTTCGGTGGATCACTCTT 163475 |||| || ||||| ||||| || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq53 Length=414 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 163024 GACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGT 163083 ||||| |||||||| || || ||||||| || | || ||||||||||||||||||||| Sbjct 80 GACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGGT 21 Query 163084 GCAGTTGTTCCATCTTCCAA 163103 ||||||||||| |||| || Sbjct 20 GCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563043516529080