Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1947 304 1e-77 seq3161 300 2e-76 seq12 197 1e-45 seq2164 127 2e-24 seq213 127 2e-24 seq4603 98.7 1e-15 seq53 89.7 5e-13 >seq1947 Length=534 Score = 304 bits (336), Expect = 1e-77 Identities = 386/531 (73%), Gaps = 0/531 (0%) Strand=Plus/Minus Query 10277 TTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTT 10336 ||||| || || || || || || || || ||||| ||| | |||||| |||| || || Sbjct 532 TTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTC 473 Query 10337 CATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCG 10396 || || ||||| || || || ||||| |||||||| || ||||| | | |||| || Sbjct 472 CACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCA 413 Query 10397 CTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAA 10456 || || | ||||| || || | || || || ||||| || | | ||||||| || Sbjct 412 CTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGT 353 Query 10457 GCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACT 10516 |||||||| ||| || || || ||||| | ||||||||||| || ||||| ||| Sbjct 352 GCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACT 293 Query 10517 GCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCAT 10576 || |||||||||||||| ||||| |||||| | || || || || || ||| | || Sbjct 292 GCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCAC 233 Query 10577 TTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGT 10636 ||||| ||||| ||||| || || | |||||||||| | ||||||| || | || Sbjct 232 TTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGC 173 Query 10637 CTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGAT 10696 || || || || | |||||||| || || || ||||||||||| | || ||||||| Sbjct 172 CTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGAC 113 Query 10697 CCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGG 10756 |||||||| || || ||||| || || || ||| | ||||||||||| |||| |||||| Sbjct 112 CCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGG 53 Query 10757 ATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTT 10807 ||||| | ||||| |||||||||| |||| ||||| || || ||| Sbjct 52 ATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq3161 Length=578 Score = 300 bits (332), Expect = 2e-76 Identities = 304/396 (77%), Gaps = 0/396 (0%) Strand=Plus/Minus Query 8830 TTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACC 8889 || || |||||||| |||||| | || ||||| || || | ||||| || || || | | Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 8890 GAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCC 8949 || ||| ||| ||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 8950 GCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGC 9009 || || || ||||||||||| | ||||||||||| || || || ||||| ||| | Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 9010 TTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTC 9069 | || |||||||| ||||| |||||||| || || |||||||| || || || || || Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 9070 TCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAA 9129 || |||||||| |||||||| || || ||||||||||||||||| | | ||| ||| Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 9130 GGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTC 9189 || || || ||||||| |||| ||| | | ||||| || || ||||||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 9190 ATGCACGAAAGAAACGCACACAACTTCCCGCTTGAC 9225 |||||||| | ||||| ||||||||||| || ||| Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq12 Length=429 Score = 197 bits (218), Expect = 1e-45 Identities = 303/431 (70%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 9851 TTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGT 9910 ||||| || || ||||||||||| | || ||||| || ||||||||||| | ||| Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 9911 GGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGT 9970 |||||| |||| || || || || || || ||||||||| ||||| | |||||| Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 9971 TACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGT 10030 ||||| || ||| || ||| | ||||| || || ||||| || || | ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 10031 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAG 10090 ||||| | || | || ||||| || ||| |||| ||||| ||| || ||| ||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 10091 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATG 10150 | || || || ||| | ||||| || || || || || |||||| |||| || || ||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 10151 TTACGCCAGTTTGAGCTGGCGAGATTAATTGGAA---TCCGACCTTACAATGCTATCGCG 10207 | || ||||||||||| || | | || || | || |||||||||||||| || Sbjct 128 CTGCGTCAGTTTGAGCTTGCACGCT---CTGTAAAGCTTCGTCCTTACAATGCTATTGCA 72 Query 10208 TTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCT 10267 || || | || || || || || || ||| ||| | |||||||| || ||||| || Sbjct 71 TTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATCA 12 Query 10268 AGTTGGTTCTT 10278 ||||||| || Sbjct 11 GGTTGGTTTTT 1 >seq2164 Length=396 Score = 127 bits (140), Expect = 2e-24 Identities = 109/132 (83%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 8476 TTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTAC 8535 || ||||| || |||||||| ||||| || || || ||||| |||||||||||||||||| Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 8536 CAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCT-TTGCTTATATGGGTCGTGAATGGGA 8594 || || | |||| ||||||| |||| ||| ||| ||| || ||||||||||| ||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 8595 ACTTTCTTACCG 8606 |||||||| ||| Sbjct 212 ACTTTCTTTCCG 223 >seq213 Length=407 Score = 127 bits (140), Expect = 2e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 8611 GGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTA 8670 || ||||||||||||||| ||| || |||||||| || ||||| |||||| |||||||| Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 8671 TTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCC 8730 ||| | |||| || | ||||||||||| ||||| || |||||||| || || || || Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 8731 GGTACGTTCAACT 8743 ||||| ||||||| Sbjct 96 GGTACTTTCAACT 84 >seq4603 Length=650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 8750 TTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTG 8809 |||| ||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 8810 GTGTCTTCGGCGGATCTCTCTT 8831 |||| || || || || || || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq53 Length=414 Score = 89.7 bits (98), Expect = 5e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8379 CGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCTGG 8438 |||||| ||||| |||||||| |||| ||||| | ||||| ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 8439 TGCAGTTGTTCC 8450 |||||||||||| Sbjct 21 TGCAGTTGTTCC 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516327696504000