Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq3161 383 2e-101 seq1947 349 4e-91 seq12 266 4e-66 seq2164 125 8e-24 seq213 104 3e-17 seq4603 89.7 6e-13 seq1029 86.0 7e-12 >seq3161 Length=578 Score = 383 bits (424), Expect = 2e-101 Identities = 319/390 (82%), Gaps = 0/390 (0%) Strand=Plus/Minus Query 161464 GCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCC 161523 |||||||||||||| |||| || || || || | |||||||| || || ||||| || Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 161524 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCAC 161583 ||| ||||||||||||||||||||||||||| || |||||||| |||||||| ||| Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 161584 GGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCAC 161643 || ||||| |||||||| || |||||||||||||| ||||||||||| || || || ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 161644 TTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 161703 |||||||||||||| |||||||| ||||| |||||||||||||| || || | ||| Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 161704 ATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAA 161763 |||||||||||||| || ||||||||||||||||||||| | ||||| ||| ||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 161764 GTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCAC 161823 || |||||||| |||| ||| | ||||||||||| || || |||||||| |||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 161824 GAGCGCAATGCTCACAACTTCCCTCTTGAC 161853 ||||| || |||||||||||||| || ||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq1947 Length=534 Score = 349 bits (386), Expect = 4e-91 Identities = 388/518 (75%), Gaps = 0/518 (0%) Strand=Plus/Minus Query 162591 TTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACG 162650 || || || || ||||||||||| ||| | |||||| ||||||||||||| |||||||| Sbjct 520 TTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTCCACAACTGGACA 461 Query 162651 CTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCT 162710 || || ||||| ||||||||||| || || || | | || | |||| | || | ||| Sbjct 460 CTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCACTTCTTTGTGCA 401 Query 162711 ATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTT 162770 |||||||| | |||||||| || || |||| |||||||| || |||||||| || Sbjct 400 ATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGTGCAAACACATTC 341 Query 162771 AAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTC 162830 || || | | || |||| ||||| || || || ||||| ||||| ||||| ||| Sbjct 340 CGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACTGCAAACCGTTTC 281 Query 162831 TGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTC 162890 ||||||||||| || || | || || |||||||||||||||||| ||||| ||||| Sbjct 280 TGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCACTTCTTCATGCTT 221 Query 162891 TTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAAT 162950 |||||||| || | ||||| |||| ||| |||| ||| | | || || || || || Sbjct 220 TTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGCCTAGCGCTAAAC 161 Query 162951 CTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAG 163010 | |||||||| ||||| || |||||||| |||| || |||||||||||||| || || Sbjct 160 TTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGACCCTGAATTCGAA 101 Query 163011 ACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTG 163070 || ||||| ||||| ||||| | |||| ||||| ||||||||||| | || | Sbjct 100 ACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGGATGGCGGCTCAA 41 Query 163071 GACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGT 163108 ||||| || || || || |||| |||||||| ||||| Sbjct 40 GACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq12 Length=429 Score = 266 bits (294), Expect = 4e-66 Identities = 314/422 (74%), Gaps = 10/422 (2%) Strand=Plus/Minus Query 162152 TTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGG 162211 ||| || || ||||| |||||||| | || ||||| || ||||||||||| ||||| Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGC-CTTGG 371 Query 162212 G-GGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTT 162270 | || ||| |||| || || |||||||| || |||||| || ||||| | || |||| Sbjct 370 GTGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTT 311 Query 162271 CCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGG 162330 | || || || ||| ||||| | || || ||||| || ||||||||| || |||| Sbjct 310 CATACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGG 251 Query 162331 GTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCC 162390 | ||||| | || | |||||||| || ||| ||||||| ||||||| || ||||||| Sbjct 250 GGCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCC 191 Query 162391 AACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCA 162450 || | || || || ||||| ||||| || || || || || || || || || || |||| Sbjct 190 AATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCA 131 Query 162451 TGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTA----TTCGTCCTTACAATGCTATT 162506 |||| || |||||||| || ||||| || ||| |||||||||||||||||||| Sbjct 130 TGCTGCGTCAGTTTGAGCTTGCACG----CTCTGTAAAGCTTCGTCCTTACAATGCTATT 75 Query 162507 GCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAA 162566 || ||||||| || || || || |||||| ||| || | ||||||||| | |||||| Sbjct 74 GCATTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAA 15 Query 162567 TC 162568 || Sbjct 14 TC 13 >seq2164 Length=396 Score = 125 bits (138), Expect = 8e-24 Identities = 109/133 (82%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 161104 TTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTC 161163 || ||||| || |||||||| || || ||||||||||| |||||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 161164 CAACTCGTTGTGTTCCACTTCCTGATTGGCATCT-ATGCTTACATGGGTCGTGAGTGGGA 161222 ||||| | || | ||||||| | | ||||||| ||| |||||||||||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 161223 ACTTTCTTACCGT 161235 |||||||| |||| Sbjct 212 ACTTTCTTTCCGT 224 >seq213 Length=407 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 161239 GGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTG 161298 || |||||||||||||| ||||| |||||||| || || || || || | ||| || Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 161299 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCT 161358 ||| | |||| || ||||||||||||| ||||| || | ||||| || ||||| || Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 161359 GGTACGTTCAACTACAT 161375 ||||| ||||||| ||| Sbjct 96 GGTACTTTCAACTTCAT 80 >seq4603 Length=650 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 161378 TTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAG 161437 |||| |||||||| ||||||||||| || |||||||| ||||| ||||| || || || | Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 161438 GTGTGTTTGGCGGTTCTCTGTT 161459 |||||||||| ||||| || || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq1029 Length=1000 Score = 86.0 bits (94), Expect = 7e-12 Identities = 102/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||| | ||||| || ||||| || ||||||||||| |||||||||| || || || Sbjct 649 TTCTGTGAATGGGTTACAAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 590 Query 160936 ATGATTCCCTGCT-TGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTC 160993 |||| ||||| || | | |||| | | | ||| ||||| ||||| || |||| ||||| Sbjct 589 ATGA-TCCCTACTCTTTTGACTGC-AACTTCTGTATTCATTATTGCATTTGTTGCTGCTC 532 Query 160994 CCCCTGTGGACAT 161006 | ||||| ||||| Sbjct 531 CTCCTGTAGACAT 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547585676197560