Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq3161 190 6e-44 seq1029 114 4e-21 seq213 87.8 5e-13 seq2164 82.4 2e-11 >seq3161 Length=578 Score = 190 bits (210), Expect = 6e-44 Identities = 285/405 (70%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 17831 TGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAG 17890 ||| || || ||||| |||||||| ||||| |||||||||||||| ||||| | || || Sbjct 172 TGATGCCAAGTCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 231 Query 17891 GTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAAT 17950 |||||| | ||||| | |||| |||| || | || | ||| || | || | Sbjct 232 GTTAGCACGGTTGATGATGTCACCCCAAGTGTTGATTACACGACCTTGAGAGTCAACTAC 291 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 || |||||||||||||| || || || || || ||||| || ||||| || | || || Sbjct 292 AGACTGGTTGAAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGATACCAAGAGCAGT 351 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | | || ||||| ||||| | |||||| || ||| | ||||| Sbjct 352 GAACCAGATACCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAGAACGAGAGTTGTT 411 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || ||| || |||||||| || | |||||||| || || || |||||||| || || Sbjct 412 GAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTA 471 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||||||||| || || || || ||| ||| ||| || |||||| ||||| Sbjct 472 AGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGTTCTCAGTAGTTTC 531 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAA 18235 | ||||| || ||||| || | |||||||| || | ||| Sbjct 532 ACGGATAAGAGATGAAGTTACCAATGAACCGTGCATTGCTGAGAA 576 >seq1029 Length=1000 Score = 114 bits (126), Expect = 4e-21 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 18687 ATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGT 18746 ||||| || ||||||||||||||||||||||| | ||| | | || ||| || ||||| Sbjct 519 ATGTCTACAGGAGGAGCAGCAACAAATGCAATAATGAATACAGAAGTTGCAGTCAAAAGA 578 Query 18747 GCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACC 18806 | ||||||||| || || |||||||| || | ||| |||||||| | || || |||||| Sbjct 579 GTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTGCTTGTAACC 638 Query 18807 CAGTCACATAA 18817 || ||||| || Sbjct 639 CATTCACAGAA 649 >seq213 Length=407 Score = 87.8 bits (96), Expect = 5e-13 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 18318 ATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 18377 ||||| ||||||||||| ||| || || |||||||| || ||||| ||||| || Sbjct 80 ATGAAGTTGAAAGTACCCGAAATGCCTAGTGGCATACCGTCTGAGAATGAACCTTGACCG 139 Query 18378 AAAGGATAAACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACA 18436 | || || | || ||||| | || | |||||||| |||||||| || ||||| ||| Sbjct 140 ATTGGGTAGATGATGAATACAGCAGTA-GCAGCTGCAACTGGTGCAGAGTAAGCTACAGC 198 Query 18437 AATCCACGGGCGCATACCTA 18456 ||||| || |||||||||| Sbjct 199 GATCCAAGGACGCATACCTA 218 >seq2164 Length=396 Score = 82.4 bits (90), Expect = 2e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 18467 AAGTTCCCATTGTCGTCCCATGTAAGCTGC-GATGCCGATGAGAAAGTGGAACACAATGA 18525 ||||||||| | || |||||||| || || |||||| | || |||||| | || || | Sbjct 215 AAGTTCCCACTCACGACCCATGTA-GCAGCAGATGCCTAGGAAGAAGTGGCAAACGATTA 157 Query 18526 GTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGT 18585 |||| || || || ||||| || | ||| ||||| || | ||||||||||| || |||| Sbjct 156 GTTGGTAAGGACCACCGTTGTAAAGCCATTCGTCTAGTGAAGCAGCTTCCCAAATAGGGT 97 Query 18586 AGAA 18589 | || Sbjct 96 AAAA 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151276009190554