Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq1947 358 8e-94 seq3161 275 8e-69 seq12 215 7e-51 seq213 107 2e-18 seq2164 102 1e-16 seq4603 86.0 8e-12 seq53 86.0 8e-12 >seq1947 Length=534 Score = 358 bits (396), Expect = 8e-94 Identities = 390/518 (75%), Gaps = 0/518 (0%) Strand=Plus/Plus Query 101731 ACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCGACTGGTGCCAACCATGCACGT 101790 ||||| ||||| ||||||| ||||| || || || || | |||| |||||| || Sbjct 3 ACCTCCTCAGGGAATACAAGTTTTTCGTGTGGCTGGTCTTGAGCCGCCATCCATGCTCGA 62 Query 101791 AGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTGCT 101850 | |||||| ||||| | |||||| ||||||||||| || ||||| || || ||||||||| Sbjct 63 ATACCTTCGTTCAACAAGATGTTTTTTGTGTAGAAGGTTTCGAATTCAGGGTCTTCTGCT 122 Query 101851 GCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATA 101910 || | |||||||| || || |||||||||||||| | ||| || || || || | | | Sbjct 123 GCGCGAATCTCTTGAGAAACGAAGTCATAAGCACGCAAGTTTAGCGCTAGGCCTAAGACA 182 Query 101911 CCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACCAC 101970 || || | ||| |||| ||||| | || |||||||| ||||| ||||| |||||||| Sbjct 183 CCAATAGCACTCATCCAAAGACCGGTTACCGGAACAAAAAGCATGAAGAAGTGCAACCAA 242 Query 101971 CTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATT 102030 | ||| ||| ||||| | |||||||| || ||||||||||||||||| || ||||| Sbjct 243 CGCTTGTTAGAGAATGCTACTCCAAAGATCTGTGACCAGAAACGGTTTGCAGTTACCATA 302 Query 102031 GAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCACCA 102090 || || |||||||| | || || | || ||| || ||| |||||||| ||| ||| Sbjct 303 GAGTAGGTCTCTTCAGCCTGAGTAGGATTGAACGCACGGAATGTGTTTGCACCATCTCCA 362 Query 102091 TCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCTCCTCCC 102150 |||||| |||| |||||||| || || | || || ||||| | || ||||| |||| Sbjct 363 TCTTCAAACAGCGTGTTCTCAACTGTTGCGCCATGAATTGCACAAAGAAGTGCAGCTCCT 422 Query 102151 AGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGT 102210 | | || || ||||||||||| ||||| ||||| || |||||||| ||||| || || Sbjct 423 AACACGCCAGCCACACCCATCATGTGGAAAGGGTTAAGTGTCCAGTTGTGGAACCCTTGG 482 Query 102211 AGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAA 102248 | |||||| | ||| | || || || || |||||||| Sbjct 483 AAGAAGAGGATGAAACGGAAGATTGCAGCCACACCAAA 520 >seq3161 Length=578 Score = 275 bits (304), Expect = 8e-69 Identities = 289/390 (74%), Gaps = 0/390 (0%) Strand=Plus/Plus Query 103180 GTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACCAGCGCG 103239 ||| || ||||||||||||||||||||||||||||| ||||||||||| || ||| || Sbjct 181 GTCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGGTTAGCACG 240 Query 103240 GTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTT 103299 ||||| | ||| |||| ||||| | |||||||| ||| |||| | |||||||| Sbjct 241 GTTGATGATGTCACCCCAAGTGTTGATTACACGACCTTGAGAGTCAACTACAGACTGGTT 300 Query 103300 GAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGAT 103359 ||||||||| ||||| |||||||| |||||||| | |||||| || ||||||||||| Sbjct 301 GAAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGATACCAAGAGCAGTGAACCAGAT 360 Query 103360 ACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGATGC 103419 ||| ||||| || | |||||||||||||| || Sbjct 361 ACCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAGAACGAGAGTTGTTGAATGAAGC 420 Query 103420 GTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTC 103479 |||||||||||| | |||||| |||||||| || || || || |||||||| || ||||| Sbjct 421 GTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAAGTTTCTTC 480 Query 103480 CTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACGAACCAG 103539 ||||| ||||||||||||||| ||| |||||| | ||||| || ||||| | || Sbjct 481 TTCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGTTCTCAGTAGTTTCACGGATAAG 540 Query 103540 CGAGGACGTAACAAGCGAACCGTGCATAGC 103569 || || || || | ||||||||||| || Sbjct 541 AGATGAAGTTACCAATGAACCGTGCATTGC 570 >seq12 Length=429 Score = 215 bits (238), Expect = 7e-51 Identities = 307/431 (71%), Gaps = 6/431 (1%) Strand=Plus/Plus Query 102259 AAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCGATA 102318 || ||||||| || ||||| ||||||||||| | |||||| || || || ||||| Sbjct 1 AAAAACCAACCTGATTGTCCTAGAGGATAGATCAAGAACACAGAAACGAACACTGCGATT 60 Query 102319 GGCCCAGAGAACGCAATAGCATTGTACGGACGAA---TTCCAATTAACCTAGCCAACTCG 102375 || | ||||| |||||||||||||| ||||||| || || | | || | ||| Sbjct 61 GGTGCTGAGAATGCAATAGCATTGTAAGGACGAAGCTTTACAG---AGCGTGCAAGCTCA 117 Query 102376 AATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCAG 102435 || ||||| |||||||| ||||| || || || ||||| || ||||| ||||| | ||| Sbjct 118 AACTGACGCAGCATGAACCCAATTAGAGCGAAAGCACCATGAAGAGCTACAAAGGTCCAA 177 Query 102436 AGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAAAGTAGA 102495 || || || | |||| ||| | ||| ||||||||||| || || ||||| || | Sbjct 178 AGACCACCCAATTGGCACCATCGTGTGAAGTCTCCTTGAGCCTCTGGGCCCCATAGGAAG 237 Query 102496 AGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAATTAGCA 102555 || | ||||| ||||| || || || |||||||| || ||||| | ||| || | Sbjct 238 AGCAATGAATGCCCCATGCTGTTTGCTGGAGTTGACACTGCTGCTGTTAAGAAGTTGCAA 297 Query 102556 CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGTCGTGCCA 102615 ||||| ||||| | || | ||||| || ||||| || || | || || || || Sbjct 298 CCTTCTAGGTATGAACTTGCTAAGCCGTGCGTGTACCAAGATGTTACGAAAGTGGTTCCT 357 Query 102616 GTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCC 102675 |||| |||||| || | || |||||||| || ||||| || | ||||||||||| Sbjct 358 GTAAACCAGCCACCCAAGGCAAGATAAGCGCAAGGGAAAAGTAGCAAGCCAGACCAACCA 417 Query 102676 ACAAAGACAAA 102686 || || ||||| Sbjct 418 ACGAACACAAA 428 >seq213 Length=407 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 103658 ATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCA 103717 ||| ||||||| || |||||||| || | |||||| | || ||||| ||||||||||| Sbjct 80 ATGAAGTTGAAAGTACCCGAAATGCCTAGTGGCATACCGTCTGAGAATGAACCTTGACCG 139 Query 103718 AAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAG 103777 | ||||||| | |||||| || | ||||| ||||| || |||||||| || ||| | Sbjct 140 ATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGCG 199 Query 103778 ATCCAGGGGCGCATGCC 103794 ||||| || ||||| || Sbjct 200 ATCCAAGGACGCATACC 216 >seq2164 Length=396 Score = 102 bits (112), Expect = 1e-16 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 103798 ACGGTAGGACAATTCCCACTCACGTCCCATATATGCAT-AGATGCCAATGAGGAAGTGGA 103856 |||| | || | |||||||||||| ||||| || ||| ||||||| | || ||||||| Sbjct 224 ACGGAAAGAAAGTTCCCACTCACGACCCATGTA-GCAGCAGATGCCTAGGAAGAAGTGGC 166 Query 103857 ATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCC 103916 | || | |||||| ||||||||||||| || ||||| || || || || || ||||||| Sbjct 165 AAACGATTAGTTGGTAAGGACCACCGTTGTAAAGCCATTCGTCTAGTGAAGCAGCTTCCC 106 Query 103917 AAATGGGATAGAA 103929 |||| || || || Sbjct 105 AAATAGGGTAAAA 93 >seq4603 Length=650 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 103574 AACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATG 103633 || ||||||||||| || || |||||||| || ||||||||||| |||||||| || ||| Sbjct 1 AAAAGTGAACCACCAAACACACCAGCAACACCTAGCATGTGGAAAGGGTGCATAAGGATG 60 Query 103634 TTATGTTCGGCTTGGAAGAC 103653 || || || |||||||| || Sbjct 61 TTGTGCTCAGCTTGGAAAAC 80 >seq53 Length=414 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 103955 GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCA 104014 ||||||||||||||||||||||||||||| ||||| | || ||||||| || |||||| Sbjct 10 GGAACAACTGCACCAGAGATGATGTTGTTGCCGTAAAGTAGAGAACCAGATACTGGTTCA 69 Query 104015 CGAATGCCGTCG 104026 || || |||||| Sbjct 70 CGGATACCGTCG 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633326784758280