Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq3161 307 3e-79 seq2164 118 3e-22 >seq3161 Length=578 Score = 307 bits (340), Expect = 3e-79 Identities = 314/410 (77%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521 || || ||||| | ||| || ||||||||||| ||||| ||||| ||||| || || | Sbjct 167 TCAACTGATGCCAAGTCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 226 Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 || ||||| |||||||| | |||||| |||| |||||||| || | || | || | Sbjct 227 CCTAGGTTAGCACGGTTGATGATGTCACCCCAAGTGTTGATTACACGACCTTGAGAGTCA 286 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | ||| ||||| ||||||||||| || | |||||| ||||||||||| | ||||| Sbjct 287 ACTACAGACTGGTTGAAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGATACCAAGA 346 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| ||||| ||||| || |||||||| |||||||| ||||| |||||| ||| || Sbjct 347 GCAGTGAACCAGATACCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAGAACGAGAG 406 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || ||| ||||||||||| || |||||||| || ||||| ||||||||||| Sbjct 407 TTGTTGAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATG 466 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821 |||||||| ||||| |||||||| |||||||||||| ||| || | | ||||| Sbjct 467 TTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGTTCTCAGTA 526 Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAA 21871 || ||||| || || || || || |||| ||||||||| || ||||| Sbjct 527 GTTTCACGGATAAGAGATGAAGTTACCAATGAACCGTGCATTGCTGAGAA 576 >seq2164 Length=396 Score = 118 bits (130), Expect = 3e-22 Identities = 102/124 (82%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 22103 AAGTTCCCACTCTCGTCCCATGTAAGCAA-AGACGCCAATGAGGAAGTGGAATACGGTGA 22161 |||||||||||| || |||||||| ||| ||| ||| | || ||||||| | ||| | | Sbjct 215 AAGTTCCCACTCACGACCCATGTA-GCAGCAGATGCCTAGGAAGAAGTGGCAAACGATTA 157 Query 22162 GTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGT 22221 ||||| | ||||| |||||||| |||||||| || |||| ||||||||||||||| |||| Sbjct 156 GTTGGTAAGGACCACCGTTGTAAAGCCATTCGTCTAGTGAAGCAGCTTCCCAAATAGGGT 97 Query 22222 AGAA 22225 | || Sbjct 96 AAAA 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146167040833980