Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3161 302 5e-77 seq1947 264 1e-65 seq12 179 4e-40 seq213 131 2e-25 seq53 84.2 3e-11 >seq3161 Length=578 Score = 302 bits (334), Expect = 5e-77 Identities = 313/410 (76%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| | ||||| | |||||||||||||||||| || || | || ||||| ||||||||| Sbjct 167 TCAACTGATGCCAAGTCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 226 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCA 124159 || | ||| || | ||| | | |||||||| || || | || | || ||| Sbjct 227 CCTAGGTTAGCACGGTTGATGATGTCACCCCAAGTGTTGATTACACGACCTTGAGAGTCA 286 Query 124160 ACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATA 124219 || || || ||||| ||||||||||| || | |||||||||||| || ||||||| | | Sbjct 287 ACTACAGACTGGTTGAAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGATACCAAGA 346 Query 124220 GAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAG 124279 | || ||||| | || || ||||| | | || ||||||||||||||| | ||| Sbjct 347 GCAGTGAACCAGATACCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAGAACGAGAG 406 Query 124280 TTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATG 124339 |||||||||||||| || |||||||| ||||||||||||||||||||||| || || ||| Sbjct 407 TTGTTGAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATG 466 Query 124340 TTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTT 124399 ||||| |||||||||||||| |||||||| |||||| ||| || || | ||| || Sbjct 467 TTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGTTCTCAGTA 526 Query 124400 GTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAA 124449 ||||| | ||| ||||| || || || | ||||| |||||||||||||| Sbjct 527 GTTTCACGGATAAGAGATGAAGTTACCAATGAACCGTGCATTGCTGAGAA 576 >seq1947 Length=534 Score = 264 bits (292), Expect = 1e-65 Identities = 383/540 (71%), Gaps = 23/540 (4%) Strand=Plus/Plus Query 122891 ACTTCTTCTGGGAATACAAAATTCTCATGCGGTTGGTCAACAGATGACATCCATGCTCTC 122950 || || || |||||||||| || || || || ||||| || | ||||||||||| Sbjct 3 ACCTCCTCAGGGAATACAAGTTTTTCGTGTGGCTGGTCTTGAGCCGCCATCCATGCTCGA 62 Query 122951 ATGCCTTCATT-AAGAAGAATGTTCTTCGTATAGAAAGTCTCGAACTCTGGGTCTTCTGC 123009 || ||||| || || ||| ||||| || || ||||| || ||||| || ||||||||||| Sbjct 63 ATACCTTCGTTCAACAAG-ATGTTTTTTGTGTAGAAGGTTTCGAATTCAGGGTCTTCTGC 121 Query 123010 TGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCTGAGGTTAAGTGCTAGACCTACGAT 123069 ||| | ||||||||||| || ||||| || || | | ||| || ||||| |||| || Sbjct 122 TGCGCGAATCTCTTGAGAAACGAAGTCATAAGCACGCAAGTTTAGCGCTAGGCCTAAGAC 181 Query 123070 ACCTATAGATGATGTCCACATACCCATGACAGGAACGAACAACATAAGGAAGTGTAAGAA 123129 ||| |||| |||| | ||| | || ||||| || | ||| | |||||| || | Sbjct 182 ACCAATAGCACTCATCCAAAGACCGGTTACCGGAACAAAAAGCATGAAGAAGTGCAACCA 241 Query 123130 TCTTTTGTTAGAAAATGCGATACCAAATATCTGTGACCAGAATCTGTTCGCTGTAATCAT 123189 | |||||||| ||||| | ||||| |||||||||||||| | ||| || || | ||| Sbjct 242 ACGCTTGTTAGAGAATGCTACTCCAAAGATCTGTGACCAGAAACGGTTTGCAGTTACCAT 301 Query 123190 ACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGCTCTGAAAGTTGTAGATTGAATCTT 123249 | || || ||||| |||| ||||||| ||| || | ||| || | ||| | | Sbjct 302 AGAGTAGGTCTCTTCAGCCTGAGTAGGATTGAACGCACGGAATGT----GTTTGCACC-- 355 Query 123250 ACCTTCAGTATATTGTGATGTGTCTTCATACAATGTGTTCTGCACTGTTGCACCATGAAT 123309 | || || |||||| ||| ||||||| |||||||| |||||||| Sbjct 356 ATCTCCA---------------TCTTCAAACAGCGTGTTCTCAACTGTTGCGCCATGAAT 400 Query 123310 GGCACATAGTAATGCTCCACCTAGTATTCCTGCAACACCCATCATGTGAAATGGATTCAA 123369 ||||| || | ||| | |||| | || || |||||||||||||| || || || | Sbjct 401 TGCACAAAGAAGTGCAGCTCCTAACACGCCAGCCACACCCATCATGTGGAAAGGGTTAAG 460 Query 123370 TGTAATGTTGTGGAAACCTTGTATGAATAAGATATAACGAAAGATTGCTGCGACACCGAA 123429 ||| ||||||||| ||||| | ||| | ||| |||| |||||||| || ||||| || Sbjct 461 TGTCCAGTTGTGGAACCCTTGGAAGAAGAGGATGAAACGGAAGATTGCAGCCACACCAAA 520 >seq12 Length=429 Score = 179 bits (198), Expect = 4e-40 Identities = 288/414 (70%), Gaps = 0/414 (0%) Strand=Plus/Plus Query 123455 TGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCG 123514 || ||||| |||||||||| || | | ||| |||||||| || |||||||| Sbjct 16 TGTCCTAGAGGATAGATCAAGAACACAGAAACGAACACTGCGATTGGTGCTGAGAATGCA 75 Query 123515 AGTGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAA 123574 | || |||||||| | || |||| | ||| | |||||| || | |||||||| Sbjct 76 ATAGCATTGTAAGGACGAAGCTTTACAGAGCGTGCAAGCTCAAACTGACGCAGCATGAAC 135 Query 123575 CCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAAC 123634 || || || | || | ||||| | ||||||||| |||| ||||| || | ||| || Sbjct 136 CCAATTAGAGCGAAAGCACCATGAAGAGCTACAAAGGTCCAAAGACCACCCAATTGGCAC 195 Query 123635 CAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATT 123694 || || ||| |||||| || || || ||||| ||||| | | ||| ||||| Sbjct 196 CATCGTGTGAAGTCTCCTTGAGCCTCTGGGCCCCATAGGAAGAGCAATGAATGCCCCATG 255 Query 123695 GCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGAT 123754 || | || || || |||||||||||||||||||| || || || |||||| | Sbjct 256 CTGTTTGCTGGAGTTGACACTGCTGCTGTTAAGAAGTTGCAACCTTCTAGGTATGAACTT 315 Query 123755 GCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATT 123814 || | || || || ||||| ||||| ||||| || |||||| ||||| ||||| | Sbjct 316 GCTAAGCCGTGCGTGTACCAAGATGTTACGAAAGTGGTTCCTGTAAACCAGCCACCCAAG 375 Query 123815 GATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAA 123868 | ||||| || ||||| | ||||| | |||||||| || | ||| |||||| Sbjct 376 GCAAGATAAGCGCAAGGGAAAAGTAGCAAGCCAGACCAACCAACGAACACAAAA 429 >seq213 Length=407 Score = 131 bits (144), Expect = 2e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 124532 ATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCA 124591 || |||||||||||||| || || || ||||||||||| || ||||||||||| ||||| Sbjct 80 ATGAAGTTGAAAGTACCCGAAATGCCTAGTGGCATACCGTCTGAGAATGAACCTTGACCG 139 Query 124592 AATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAG 124651 | |||||| | | ||||||||| ||||| | |||||||| || ||||| ||| | Sbjct 140 ATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGCG 199 Query 124652 ATCCAAGGACGCATTCCTAA 124671 |||||||||||||| ||||| Sbjct 200 ATCCAAGGACGCATACCTAA 219 >seq53 Length=414 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 124820 TTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCT 124879 ||||| | ||||||||||||||||||||||||||||| || || | | |||||| | | Sbjct 1 TTTGAAGTAGGAACAACTGCACCAGAGATGATGTTGTTGCCGTAAAGTAGAGAACCAGAT 60 Query 124880 ACTGGTTCTCTGATTCCGTCG 124900 |||||||| | ||| |||||| Sbjct 61 ACTGGTTCACGGATACCGTCG 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578827660609320