Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1947 336 3e-87 seq3161 334 1e-86 seq12 228 1e-54 seq213 131 2e-25 seq2164 100 4e-16 seq4603 95.1 2e-14 seq53 86.0 8e-12 >seq1947 Length=534 Score = 336 bits (372), Expect = 3e-87 Identities = 380/509 (75%), Gaps = 0/509 (0%) Strand=Plus/Plus Query 23433 TTTTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATA 23492 ||||||||||| ||||| || | ||||||| | || | || | ||||||||| || Sbjct 24 TTTTCGTGTGGCTGGTCTTGAGCCGCCATCCATGCTCGAATACCTTCGTTCAACAAGATG 83 Query 23493 TTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACA 23552 ||||| ||||||||||| || | | ||||| || || |||||||||||| || Sbjct 84 TTTTTTGTGTAGAAGGTTTCGAATTCAGGGTCTTCTGCTGCGCGAATCTCTTGAGAAACG 143 Query 23553 AAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGA 23612 || ||||||||||| | || || || || || | || ||||||| | | ||||||| Sbjct 144 AAGTCATAAGCACGCAAGTTTAGCGCTAGGCCTAAGACACCAATAGCACTCATCCAAAGA 203 Query 23613 CCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACC 23672 || | || |||||||| | ||| |||||||||||||||||||| || || || || Sbjct 204 CCGGTTACCGGAACAAAAAGCATGAAGAAGTGCAACCAACGCTTGTTAGAGAATGCTACT 263 Query 23673 CCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGA 23732 || ||||| |||||||| ||||| ||||| || ||||| || |||||||| || ||||| Sbjct 264 CCAAAGATCTGTGACCAGAAACGGTTTGCAGTTACCATAGAGTAGGTCTCTTCAGCCTGA 323 Query 23733 GTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCG 23792 || | || |||||| || |||||||| |||||||||||| |||| || ||||| Sbjct 324 GTAGGATTGAACGCACGGAATGTGTTTGCACCATCTCCATCTTCAAACAGCGTGTTCTCA 383 Query 23793 ACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATC 23852 || || | |||||||| ||| | |||||||| |||| | | ||||| || |||||| Sbjct 384 ACTGTTGCGCCATGAATTGCACAAAGAAGTGCAGCTCCTAACACGCCAGCCACACCCATC 443 Query 23853 ATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAA 23912 || ||||| ||||| || |||||||| || || || |||| |||||| | ||| | ||| Sbjct 444 ATGTGGAAAGGGTTAAGTGTCCAGTTGTGGAACCCTTGGAAGAAGAGGATGAAACGGAAG 503 Query 23913 ATCGCCGCAACACCGAAACTCGGCGCAAA 23941 || || || ||||| || || || ||||| Sbjct 504 ATTGCAGCCACACCAAAGCTAGGTGCAAA 532 >seq3161 Length=578 Score = 334 bits (370), Expect = 1e-86 Identities = 316/402 (79%), Gaps = 1/402 (0%) Strand=Plus/Plus Query 26735 CAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAG 26794 |||| || | ||| || || || ||||| | ||||| || || || | || || || Sbjct 178 CAAG-TCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGGTTAG 236 Query 26795 CACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACT 26854 ||||||||| | ||| |||||||||||| |||||||| || || |||| ||||||| Sbjct 237 CACGGTTGATGATGTCACCCCAAGTGTTGATTACACGACCTTGAGAGTCAACTACAGACT 296 Query 26855 GATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACC 26914 | ||||||||||||||||| || ||||| ||||| || || | |||||| || ||||||| Sbjct 297 GGTTGAAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGATACCAAGAGCAGTGAACC 356 Query 26915 AGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATG 26974 |||| ||||| || ||||||||||||||||||||||| | ||||| ||||||||||||| Sbjct 357 AGATACCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAGAACGAGAGTTGTTGAATG 416 Query 26975 AAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCT 27034 |||| ||||||||||| | |||||| ||||| || ||||| || || |||||||| || | Sbjct 417 AAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAAGTTT 476 Query 27035 CTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGA 27094 ||||||||||||||||||| |||||| ||| || || | ||||| || ||||||| Sbjct 477 CTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGTTCTCAGTAGTTTCACGGA 536 Query 27095 CGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAA 27136 || || || || |||| |||||||| || ||||||| Sbjct 537 TAAGAGATGAAGTTACCAATGAACCGTGCATTGCTGAGAAAA 578 >seq12 Length=429 Score = 228 bits (252), Expect = 1e-54 Identities = 311/431 (72%), Gaps = 6/431 (1%) Strand=Plus/Plus Query 23940 AAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAATA 23999 || |||||| ||| ||||| | ||||||||| | ||| ||||| ||||| || || || Sbjct 1 AAAAACCAACCTGATTGTCCTAGAGGATAGATCAAGAACACAGAAACGAACACTGCGATT 60 Query 24000 GGACCAGAAAAAGCAATCGCATTGTAGGGACGGA---TTCCAATTAGACGTGCCAGTTCA 24056 || | || || ||||| |||||||| ||||| | || || || ||||| || ||| Sbjct 61 GGTGCTGAGAATGCAATAGCATTGTAAGGACGAAGCTTTACAG--AG-CGTGCAAGCTCA 117 Query 24057 AACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAA 24116 |||||||| | ||| || || || || || || ||||| || ||||| ||||||| |||| Sbjct 118 AACTGACGCAGCATGAACCCAATTAGAGCGAAAGCACCATGAAGAGCTACAAAGGTCCAA 177 Query 24117 AGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGA 24176 || || || | |||| ||| ||| ||||| ||||||| ||| || ||||| || | Sbjct 178 AGACCACCCAATTGGCACCATCGTGTGAAGTCTCCTTGAGCCTCTGGGCCCCATAGGAAG 237 Query 24177 AGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCA 24236 || | ||||| ||||| || || || || || || ||||| || | ||||| | Sbjct 238 AGCAATGAATGCCCCATGCTGTTTGCTGGAGTTGACACTGCTGCTGTTAAGAAGTTGCAA 297 Query 24237 CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCA 24296 || || || || ||||| || | || || ||||||||| || || |||| || || Sbjct 298 CCTTCTAGGTATGAACTTGCTAAGCCGTGCGTGTACCAAGATGTTACGAAAGTGGTTCCT 357 Query 24297 GTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACCC 24356 |||| ||| || || | |||||||||||| || | |||||| | ||||||||||| Sbjct 358 GTAAACCAGCCACCCAAGGCAAGATAAGCGCAAGGGAAAAGTAGCAAGCCAGACCAACCA 417 Query 24357 ACAAAGACAAA 24367 || || ||||| Sbjct 418 ACGAACACAAA 428 >seq213 Length=407 Score = 131 bits (144), Expect = 2e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 27217 ATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCG 27276 ||| |||| |||||||| || || || || |||||| | || ||||| |||||||||||| Sbjct 80 ATGAAGTTGAAAGTACCCGAAATGCCTAGTGGCATACCGTCTGAGAATGAACCTTGACCG 139 Query 27277 AAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAG 27336 | || |||| || |||||| ||| | ||||| || ||||| ||||| || |||||| | Sbjct 140 ATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGCG 199 Query 27337 ATCCATGGACGCATACCTAA 27356 ||||| |||||||||||||| Sbjct 200 ATCCAAGGACGCATACCTAA 219 >seq2164 Length=396 Score = 100 bits (110), Expect = 4e-16 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 27356 AACGATATGAGAGTTCCCACTCACGTCCCATATAAGCAT-AGATGCCGATAAGGAAGTGG 27414 |||| | || |||||||||||||| ||||| || ||| ||||||| | | ||||||| Sbjct 225 AACGGAAAGAAAGTTCCCACTCACGACCCATGTA-GCAGCAGATGCCTAGGAAGAAGTGG 167 Query 27415 AAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCC 27474 | || | |||||| ||||||||||||| || | ||| || || ||||| || |||||| Sbjct 166 CAAACGATTAGTTGGTAAGGACCACCGTTGTAAAGCCATTCGTCTAGTGAAGCAGCTTCC 107 Query 27475 CAGATTGGGTAGAA 27488 || || ||||| || Sbjct 106 CAAATAGGGTAAAA 93 >seq4603 Length=650 Score = 95.1 bits (104), Expect = 2e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 27133 AAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATA 27192 ||||| || ||||| || || ||||||||||| ||||||||||| |||||||||||||| Sbjct 1 AAAAGTGAACCACCAAACACACCAGCAACACCTAGCATGTGGAAAGGGTGCATAAGGATG 60 Query 27193 TTGTGTTCTGCCTGGAATACAA 27214 ||||| || || ||||| |||| Sbjct 61 TTGTGCTCAGCTTGGAAAACAA 82 >seq53 Length=414 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 27505 TTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCA 27564 |||||| | || |||||||||||||| |||||||||||||| || | || ||||||| Sbjct 1 TTTGAAGTAGGAACAACTGCACCAGAGATGATGTTGTTGCCGTAAAGTAGAGAACCAGAT 60 Query 27565 ACGGGTTCACGAATACCGTC 27584 || |||||||| |||||||| Sbjct 61 ACTGGTTCACGGATACCGTC 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665298154020120