Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq3161 271 9e-68 seq213 100 4e-16 >seq3161 Length=578 Score = 271 bits (300), Expect = 9e-68 Identities = 306/407 (75%), Gaps = 6/407 (1%) Strand=Plus/Plus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| | ||||| ||||||| |||||||||||| || || | || ||||| ||||||||| Sbjct 167 TCAACTGATGCCAAGTCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 226 Query 7942 CCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCA--TTAACA- 7998 |||| ||| || | ||| | | ||||||||| || ||||| || | || | | Sbjct 227 CCTAGGTTAGCACGGTTGATGATGTCACCCCAAGTGT---TGATTACACGACCTTGAGAG 283 Query 7999 TCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCC 8058 ||||| || || ||||| ||||| || ||||||||||| |||||||| || | ||||| Sbjct 284 TCAACTACAGACTGGTTGAAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGATACCA 343 Query 8059 ATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTA 8118 | || ||| ||||| | || || || || ||| ||| ||||||||||||||| | | Sbjct 344 AGAGCAGTGAACCAGATACCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAGAACGA 403 Query 8119 CTGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACA 8178 |||||| || || || || |||||||||| | ||||||||| || || ||||||||| Sbjct 404 GAGTTGTTGAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACA 463 Query 8179 ATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCA 8238 || || || || |||||||||||||| ||||| |||||| ||| ||| || | ||| Sbjct 464 ATGTTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGTTCTCA 523 Query 8239 GTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGC 8285 || || || | ||| ||||| || || || || ||||||||||| || Sbjct 524 GTAGTTTCACGGATAAGAGATGAAGTTACCAATGAACCGTGCATTGC 570 >seq213 Length=407 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 8374 ATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCA 8433 |||||||| || ||||| ||||| ||||| ||||| || || ||||||||||| ||||| Sbjct 80 ATGAAGTTGAAAGTACCCGAAATGCCTAGTGGCATACCGTCTGAGAATGAACCTTGACCG 139 Query 8434 AATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAG 8493 | ||| || | | ||| || || |||||| | ||||| ||| || |||||| | Sbjct 140 ATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGCG 199 Query 8494 ATCCATGGTCTCATACCTAA 8513 ||||| || | ||||||||| Sbjct 200 ATCCAAGGACGCATACCTAA 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615680789876520