Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq3161 356 3e-93 seq1947 336 2e-87 seq12 192 7e-44 seq2164 122 1e-22 seq213 111 2e-19 seq7328 98.7 1e-15 seq1029 93.3 5e-14 seq53 93.3 5e-14 >seq3161 Length=578 Score = 356 bits (394), Expect = 3e-93 Identities = 313/390 (80%), Gaps = 0/390 (0%) Strand=Plus/Minus Query 166357 GCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCC 166416 || |||||||| ||||| ||||| ||||| | | || || ||||| | |||||| Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 166417 CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCAT 166476 ||| |||||||||||||| |||||||||||||| |||||||| || || || || Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 166477 GGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCAC 166536 |||||||| |||||| | ||||||||||||||||||||||||||||| || || | ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 166537 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACG 166596 ||||||||||||||||||||||| || || ||||||||||| || ||||| |||| || Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 166597 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 166656 |||||||||||||| ||||||||||||||||||||||| | |||| ||| |||||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 166657 GTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCAT 166716 || | ||||| |||| || | | ||||| ||| || ||||||||||| ||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 166717 GAGCGTAACGCACACAACTTCCCCCTCGAC 166746 ||||||||||| ||||||||||| || ||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq1947 Length=534 Score = 336 bits (372), Expect = 2e-87 Identities = 393/531 (74%), Gaps = 0/531 (0%) Strand=Plus/Minus Query 167476 TTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTC 167535 ||||| || ||| || || || || |||||||| ||| |||||||| ||||||| ||| Sbjct 532 TTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTC 473 Query 167536 CACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCA 167595 |||||||||||||| || || || || ||||||||||| || || | | || | |||| Sbjct 472 CACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCA 413 Query 167596 TTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAA 167655 | |||| |||||| ||||| | ||||| ||||| || ||| ||||||||| || Sbjct 412 CTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGT 353 Query 167656 GCAAACACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACA 167715 |||||||| || || ||| || ||||||||| |||||||| || || ||||| || Sbjct 352 GCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACT 293 Query 167716 GCAAACCGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCAT 167775 |||||||| |||||||| |||||||| || | || ||| ||||| || ||| | || Sbjct 292 GCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCAC 233 Query 167776 TTCTTTATGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGT 167835 ||||| ||| | || ||||| || | || ||||||| | ||||| || | || Sbjct 232 TTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGC 173 Query 167836 CTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGAT 167895 || || || || | |||||||| || ||||||||||||||||| | || || || || Sbjct 172 CTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGAC 113 Query 167896 CCAGAGTTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGG 167955 || || || ||||| ||||| || ||||||||| | |||| |||||| ||||||||||| Sbjct 112 CCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGG 53 Query 167956 TTAGCACCTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTT 168006 | || || || || || || || || |||| ||||| ||||| ||| Sbjct 52 ATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq12 Length=429 Score = 192 bits (212), Expect = 7e-44 Identities = 296/418 (71%), Gaps = 6/418 (1%) Strand=Plus/Minus Query 167049 TTTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGG 167108 |||||| || ||||| |||||||| | || ||||| || ||||||||||| | || Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGG 370 Query 167109 CGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGC--GTCC 167166 || ||| |||| || || |||||||| || |||||| || || || | || || | Sbjct 369 TGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTC 310 Query 167167 AGTTATCTTGAGGGTGCGAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATG 167226 | || || || ||| ||||| | || || ||||| ||||||||| | ||| Sbjct 309 A--TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATG 252 Query 167227 GGTCATTCTTTACTTCTTCTATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTC 167286 || ||||| || || | |||||||| || || ||||||| || ||| | ||| | Sbjct 251 GGGCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGC 192 Query 167287 CAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTC 167346 ||| | || || || ||| | ||||| || || || || || || ||||| ||||| ||| Sbjct 191 CAATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTC 132 Query 167347 ATGCTTCGACAGTTTGAACTTGCTCGC-CTGATTGGTATCCGTCCCTACAATGCTATTGC 167405 ||||| || |||||||| ||||| ||| ||| | | ||||| |||||||||||||| Sbjct 131 ATGCTGCGTCAGTTTGAGCTTGCACGCTCTG-TAAAGCTTCGTCCTTACAATGCTATTGC 73 Query 167406 TTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAA 167463 ||||| | || || || || |||||| || ||| | ||||||| || || ||| Sbjct 72 ATTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAA 15 >seq2164 Length=396 Score = 122 bits (134), Expect = 1e-22 Identities = 106/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 165997 TTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTC 166056 || || || || |||||||| || || || ||||||||||| || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 166057 CAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAA 166116 ||||| | || | ||||||| | | ||||||| |||||||||||||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 166117 CTGTCTTACCGT 166128 || |||| |||| Sbjct 213 CTTTCTTTCCGT 224 >seq213 Length=407 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 166130 TAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAG 166189 ||||||||||||| |||||| ||| |||||||| |||||||| || ||||| | ||| | Sbjct 218 TAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTG 159 Query 166190 TATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCT 166249 ||||| | | || || ||||||||||| ||||| || | |||||||| || || | Sbjct 158 TATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTT 99 Query 166250 CAGGAACATTCAACTACAT 166268 | || || ||||||| ||| Sbjct 98 CGGGTACTTTCAACTTCAT 80 >seq7328 Length=399 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 ||||||||||||||| || ||||| |||| ||||||| || |||||||||||||||| || Sbjct 107 TCCTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGGTTGGTCGTAGGTTCAAGTC 48 Query 18189 CTACCTGGGGAG 18200 |||||||||||| Sbjct 47 CTACCTGGGGAG 36 >seq1029 Length=1000 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| ||||||||||| ||||| | ||||| || || | |||||||||||| || Sbjct 650 CTTCTGTGAATGGGTTACAAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCT 591 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTG-CTTCATCGTCGCCTTCATCGCTGCTC 165886 ||||| || ||||| ||| | |||||| |||| ||||| | || || | ||||||| Sbjct 590 AATGATCCCTACTCTTTTGACTGCAACT-TCTGTATTCATTATTGCATTTGTTGCTGCTC 532 Query 165887 CCCCTGTGGACAT 165899 | ||||| ||||| Sbjct 531 CTCCTGTAGACAT 519 >seq53 Length=414 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 165900 CGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGG 165959 |||||| ||||||||||| || |||||||||| | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 165960 TGCAGTTGTTCCCTCTTCCAA 165980 |||||||||||| |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561082494980400