Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq3161 307 3e-79 seq2164 118 3e-22 >seq3161 Length=578 Score = 307 bits (340), Expect = 3e-79 Identities = 314/410 (77%), Gaps = 0/410 (0%) Strand=Plus/Minus Query 41816 TTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAG 41875 ||||| || ||||||||| |||| || || || || || ||||| || ||||| | Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 41876 GTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCT 41935 | || ||| |||||||||||| |||||||| ||||| |||||||| ||||||||| Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 41936 GCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGT 41995 || ||||| || |||||||| || ||||||||||| ||| || || || || ||| | Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 41996 CTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTG 42055 ||||| ||||| |||||||| |||||||| || ||||| ||||| |||| ||||| | Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 42056 TCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGAT 42115 ||||||||||| |||||| | || ||||||||||| ||||| ||| | | | || | Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 42116 GGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTG 42175 || | || |||||||| |||| |||||| | |||||||| ||||| || | || || Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 42176 ATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGCATCCGTGGA 42225 ||||| ||||| ||||| ||||||||||| || ||| | ||||| || || Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCAGTTGA 167 >seq2164 Length=396 Score = 118 bits (130), Expect = 3e-22 Identities = 102/124 (82%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 41462 TTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTC 41521 || ||||| ||||||||||||||| |||| || |||||||| |||||||| ||||| | | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 41522 CAACTCACCGTATTCCACTTCCTCATTGGCGTCT-TTGCTTACATGGGACGAGAGTGGGA 41580 ||||| | ||| | ||||||| || | ||| ||| ||| |||||||| || |||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 41581 ACTT 41584 |||| Sbjct 212 ACTT 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146173439041064