Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq3161 266 9e-67 seq213 113 1e-20 seq2164 80.6 8e-11 >seq3161 Length=578 Score = 266 bits (294), Expect = 9e-67 Identities = 305/410 (74%), Gaps = 0/410 (0%) Strand=Plus/Minus Query 42871 TTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAAC 42930 |||||||| ||||| ||| | || || || |||||| | |||||||| ||||| ||| Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 42931 GAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCA 42990 ||| || ||| ||||||||||||||||| || || ||||| ||||||||||| Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 42991 GCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCT 43050 || || ||||||||||| || || ||||||||||| || || || || || ||| ||| Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 43051 TTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTC 43110 | |||||||| ||||| || ||||| || || || || ||||||||| ||||||| || Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 43111 AGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAG 43170 ||| ||||| || ||| | || ||||| ||||| ||||| || | ||||| ||| Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 43171 AATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTG 43230 || ||| ||| ||||||| ||| || | || ||||| ||||| || | || || Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 43231 ATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGA 43280 ||||||||||| || || || |||||||| || || | ||||| || || Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCAGTTGA 167 >seq213 Length=407 Score = 113 bits (124), Expect = 1e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 42652 GGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTC 42711 || ||| | || |||||| ||| ||||||||||| || || || || || ||||| || Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 42712 TTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCC 42771 ||| | |||| ||| | || |||||||| || ||||| || ||||| || |||||||| Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 42772 GGTACGTTCAACTTCAT 42788 ||||| ||||||||||| Sbjct 96 GGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 80.6 bits (88), Expect = 8e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 42526 ATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTC 42585 || |||||||| | | || ||||||||||| ||||| || || ||||| || || || Sbjct 102 ATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATC 161 Query 42586 GTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTAC 42645 || | ||||||| | | || |||| || ||| |||| || || ||||||||||| | | Sbjct 162 GTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTC 221 Query 42646 CG 42647 || Sbjct 222 CG 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143492590272868