Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq3161 233 6e-57 >seq3161 Length=578 Score = 233 bits (258), Expect = 6e-57 Identities = 296/407 (73%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 25873 TGATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAG 25932 |||||| ||||| ||||| ||||| ||||| |||||||||||||| ||||| | || || Sbjct 172 TGATGCCAAGTCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 231 Query 25933 GTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTAC 25992 |||||| ||||| | | ||| |||| || |||| || | | || ||||| Sbjct 232 GTTAGCACGGTTGATGATGTCACCCCAAGTGTTGATTACACGACCTTGAGAGTCAACTAC 291 Query 25993 TGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGT 26052 |||||||| ||||| ||||| || ||||| |||||||| || ||||||| | || || Sbjct 292 AGACTGGTTGAAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGATACCAAGAGCAGT 351 Query 26053 CAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATT 26112 | ||| || ||||| || ||||| | |||||| ||||| ||||||||||| ||| || Sbjct 352 GAACCAGATACCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAGAACGAGAGTTGTT 411 Query 26113 AAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATA 26172 || || || || || |||| | |||||||| ||||||||||| ||||| || || Sbjct 412 GAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTA 471 Query 26173 TGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTC 26232 || ||||| ||||| || ||||| || ||| || || | | ||| || ||||| Sbjct 472 AGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGTTCTCAGTAGTTTC 531 Query 26233 TGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAA 26279 ||||| || ||||| ||||| |||||||| || | ||||| Sbjct 532 ACGGATAAGAGATGAAGTTACCAATGAACCGTGCATTGCTGAGAAAA 578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147670619498720