Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq3161 407 2e-108 seq213 105 8e-18 seq4603 91.5 2e-13 seq2164 89.7 6e-13 seq53 86.0 7e-12 >seq3161 Length=578 Score = 407 bits (450), Expect = 2e-108 Identities = 329/398 (83%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 155549 TTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGC 155608 ||||||| || ||||||||||||||||| || || || || |||||||||||||||||| Sbjct 578 TTTTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGA 519 Query 155609 AAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTG 155668 | || ||| ||| ||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 518 ACGAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTG 459 Query 155669 CTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAA 155728 |||| || || ||||| |||||||| |||||||| || || || ||||||||||| | Sbjct 458 CTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTT 399 Query 155729 GTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTG 155788 |||||||||||||||||||||||||||||| || | |||||| |||||| | ||| Sbjct 398 CTCTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTA 339 Query 155789 TGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTA 155848 | || || |||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 338 TCTCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTC 279 Query 155849 GTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAG 155908 ||| || ||| || |||| ||||| | ||||| ||| || |||||||||| Sbjct 278 AAGGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAG 219 Query 155909 TAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGAC 155946 ||||||||||||||||||||||||||||||| || ||| Sbjct 218 TAATGCACGAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq213 Length=407 Score = 105 bits (116), Expect = 8e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 155332 GGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTA 155391 || ||||||||||||||| ||| || |||||||||||||| | ||||| |||||| Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 155392 TTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCT 155451 ||| | | || || ||||||||||||| ||||| || | ||||| || || || || Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 155452 GGTACTTTTAACT 155464 |||||||| |||| Sbjct 96 GGTACTTTCAACT 84 >seq4603 Length=650 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 155473 GTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGT 155532 || |||||||| || ||||| |||||||||||||| ||||||||||| || || || ||| Sbjct 80 GTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTGGT 21 Query 155533 GTGTTCGGTGGATCTCTTTT 155552 ||||| ||||| || ||||| Sbjct 20 GTGTTTGGTGGTTCACTTTT 1 >seq2164 Length=396 Score = 89.7 bits (98), Expect = 6e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 155197 TTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTC 155256 || || |||||||||||||| || | || || || ||| | ||||| |||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 155257 CAACTTGTAGTCTTCCACTTCCTTATCGGAATC-ACAGCATACTGTGGTCGTCAGTGGGA 155315 ||||| | || | ||||||| | | || ||| | || ||| |||||| ||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 155316 ACTTTCTTACCGT 155328 |||||||| |||| Sbjct 212 ACTTTCTTTCCGT 224 >seq53 Length=414 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 155101 GATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGT 155160 || ||||| |||||||| || |||||||| || | || || |||||||||||||||||| Sbjct 80 GACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGGT 21 Query 155161 GCTGTTGTCCCTAGTTCAAA 155180 || ||||| |||| |||||| Sbjct 20 GCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584662739409960