Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq3161 251 2e-62 seq213 84.2 6e-12 seq1029 82.4 2e-11 >seq3161 Length=578 Score = 251 bits (278), Expect = 2e-62 Identities = 298/404 (74%), Gaps = 0/404 (0%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| | || || |||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 167 TCAACTGATGCCAAGTCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 226 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 ||||| | | ||| | | ||| ||||||| || || ||| | || ||| Sbjct 227 CCTAGGTTAGCACGGTTGATGATGTCACCCCAAGTGTTGATTACACGACCTTGAGAGTCA 286 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 ||||| |||||||| ||||| ||||| || ||||| || ||||| ||||| ||||| | Sbjct 287 ACTACAGACTGGTTGAAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGATACCAAGA 346 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | || | ||| || |||| || || | ||| |||| |||||||| || | ||| Sbjct 347 GCAGTGAACCAGATACCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAGAACGAGAG 406 Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||||||||| ||||| || ||||| | ||||||||||||||||||||| || ||| Sbjct 407 TTGTTGAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATG 466 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 || ||||| || |||| ||||| ||||| || || ||| ||||| | || || Sbjct 467 TTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGTTCTCAGTA 526 Query 40884 GTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGC 40927 || || || || | || ||||| || | |||||||| || Sbjct 527 GTTTCACGGATAAGAGATGAAGTTACCAATGAACCGTGCATTGC 570 >seq213 Length=407 Score = 84.2 bits (92), Expect = 6e-12 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 41016 ATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCG 41075 ||||||||||| || || || |||| |||||||| || ||||| ||||| |||||| Sbjct 80 ATGAAGTTGAAAGTACCCGAAATGCCTAGTGGCATACCGTCTGAGAATGAACCTTGACCG 139 Query 41076 AATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAAT 41135 | ||| || | | ||||||||| ||| |||| | ||| || | ||| || ||| Sbjct 140 ATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGCG 199 Query 41136 ATCCATGGTCTCATACCTA 41154 ||||| || | |||||||| Sbjct 200 ATCCAAGGACGCATACCTA 218 >seq1029 Length=1000 Score = 82.4 bits (90), Expect = 2e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 41385 ATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAA 41443 || |||||||| || || || | ||| || || ||||| ||| | || ||||| | | Sbjct 519 ATGTCTACAGGAGGAGCAGCAACAAATGCAATAATGAATACA-GAAGTTGCAGTCAAAAG 577 Query 41444 TGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGAC 41503 | || |||||||| |||||||||||||| | ||| |||||||| || ||||| || || Sbjct 578 AGTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTGCTTGTAAC 637 Query 41504 CCAGTTACAAAA 41515 ||| | ||| || Sbjct 638 CCATTCACAGAA 649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143662142760594