Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq3161 340 2e-88 seq213 116 4e-21 seq4603 95.1 1e-14 seq2475 89.7 6e-13 >seq3161 Length=578 Score = 340 bits (376), Expect = 2e-88 Identities = 312/393 (79%), Gaps = 6/393 (2%) Strand=Plus/Plus Query 67367 GTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCT 67426 ||| || ||||||||||||||||||||||||||||| |||||||| || || || | Sbjct 181 GTCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGGTTAGCACG 240 Query 67427 GTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAACGACGGATTG 67483 ||| | |||||| ||||||| || || || |||| | |||||| || || || Sbjct 241 GTTGATGATGTCACCCCAAGTGTTGATTAC---ACGACCTTGAGAGTCAACTACAGACTG 297 Query 67484 GTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCA 67543 |||||||||||||||||| |||||||||||||| || || | ||| | ||||||||||| Sbjct 298 GTTGAAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGATACCAAGAGCAGTGAACCA 357 Query 67544 GATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGA 67603 ||| | || ||||| ||||||||||||||||||||||| | ||||||||||| || Sbjct 358 GATACCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAGAACGAGAGTTGTTGAATGA 417 Query 67604 TGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTC 67663 || || |||||||| | ||||| ||||| || || |||||||||||||||||||| || Sbjct 418 AGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAAGTTTC 477 Query 67664 TTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGAT 67723 ||||||||| |||||||||||||| ||| || || | |||||||||||| | ||| Sbjct 478 TTCTTCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGTTCTCAGTAGTTTCACGGAT 537 Query 67724 AAGAGAAGAAGTAACAAGAGAACCGTGCATAGC 67756 |||||| ||||| || | ||||||||||| || Sbjct 538 AAGAGATGAAGTTACCAATGAACCGTGCATTGC 570 >seq213 Length=407 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 67845 ATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCG 67904 ||| |||| |||||||| ||||| || || ||||| |||| ||||| |||||||||||| Sbjct 80 ATGAAGTTGAAAGTACCCGAAATGCCTAGTGGCATACCGTCTGAGAATGAACCTTGACCG 139 Query 67905 AAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAG 67964 | || |||| | ||| ||||| || || | ||||| |||||||| |||||| | Sbjct 140 ATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGCG 199 Query 67965 ATCCAAGGACGCATACC 67981 ||||||||||||||||| Sbjct 200 ATCCAAGGACGCATACC 216 >seq4603 Length=650 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 67761 AAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATG 67820 || ||||||||||| || ||||| || || || ||||| ||||| ||||||||||||||| Sbjct 1 AAAAGTGAACCACCAAACACACCAGCAACACCTAGCATGTGGAAAGGGTGCATAAGGATG 60 Query 67821 TTGTGCTCTGCTTGGAACAC 67840 |||||||| |||||||| || Sbjct 61 TTGTGCTCAGCTTGGAAAAC 80 >seq2475 Length=244 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/88 (83%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 39360 GGAGTGGGGGGACTTGAACCCCCACGAC---TCAAGGTCAACAGATTTTAAGTCTGGTGC 39416 ||| ||| |||| |||||||| |||||| | | ||||||| ||||||||||| | || Sbjct 168 GGAATGGAGGGAATTGAACCCTCACGACCGTTTAGGGTCAACGGATTTTAAGTCCGTAGC 109 Query 39417 GTCTACCGATTCCGCCACACTCCCAGTT 39444 ||||||| ||||||||||||||||| || Sbjct 108 GTCTACCAATTCCGCCACACTCCCAATT 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566780014357560