Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1947 365 5e-96 seq3161 361 6e-95 seq12 214 2e-50 seq213 134 2e-26 seq7328 100 3e-16 seq1029 96.9 4e-15 seq4603 91.5 2e-13 seq2164 87.8 2e-12 seq53 87.8 2e-12 >seq1947 Length=534 Score = 365 bits (404), Expect = 5e-96 Identities = 403/534 (75%), Gaps = 2/534 (0%) Strand=Plus/Plus Query 66611 AACTTCTTCTGGGAATACAAAGTTTTCATGCGGTTGATCGATAGGTGCCAACCATGCACG 66670 ||| || || |||||||||| ||||| || || || || || |||| |||||| || Sbjct 2 AACCTCCTCAGGGAATACAAGTTTTTCGTGTGGCTGGTCTTGAGCCGCCATCCATGCTCG 61 Query 66671 AAGACCTTCATTCAATAGAATGTTCTTTGTGTAGAACGTCTCGAACTCTGGGTCTTCTGC 66730 || |||||| ||||| | ||||| ||||||||||| || ||||| || ||||||||||| Sbjct 62 AATACCTTCGTTCAACAAGATGTTTTTTGTGTAGAAGGTTTCGAATTCAGGGTCTTCTGC 121 Query 66731 TGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAAT 66790 ||| | |||||||| || || |||||||||||||| | ||| || || || || | | Sbjct 122 TGCGCGAATCTCTTGAGAAACGAAGTCATAAGCACGCAAGTTTAGCGCTAGGCCTAAGAC 181 Query 66791 ACCGATGGAACTTGTCCAAAGACCCATAACAGGAACAAACAACATAAAGAAATGCAACCA 66850 ||| || | ||| |||||||||| | || |||||||| | ||| ||||| |||||||| Sbjct 182 ACCAATAGCACTCATCCAAAGACCGGTTACCGGAACAAAAAGCATGAAGAAGTGCAACCA 241 Query 66851 CCTCTTATTGCTAAACGCAATACCAAAGATCTGAGACCAGAAGCGGTTTGCAGTAACCAT 66910 | ||| || || || | ||||||||||| |||||||| ||||||||||| ||||| Sbjct 242 ACGCTTGTTAGAGAATGCTACTCCAAAGATCTGTGACCAGAAACGGTTTGCAGTTACCAT 301 Query 66911 TGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACC 66970 ||||| || ||||| | ||||||| | ||| || ||| |||||||| || || Sbjct 302 AGAGTAGGTCTCTTCAGCCTGAGTAGGATTGAACGCACGGAATGTGTTTGCACCATCTCC 361 Query 66971 ATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCACCACC 67030 ||||||| |||| || ||||| ||||| | |||||||| ||| |||| | |||| | || Sbjct 362 ATCTTCAAACAGCGTGTTCTCAACTGTTGCGCCATGAATTGCACAAAGAAGTGCAGCTCC 421 Query 67031 CAGGATACCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTG 67090 | | || || ||||||||||| || || ||||| | |||||||| ||||| ||||| Sbjct 422 TAACACGCCAGCCACACCCATCATGTGGAAAGGGTTAAGTGTCCAGTTGTGGAACCCTTG 481 Query 67091 TAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCCCGAAAGAT-GGAGCGAAAA 67143 | |||||| | ||| || |||||||| | || || |||| | || || |||| Sbjct 482 GAAGAAGAGGATGAAACGGAAGATTGCAGCCACACC-AAAGCTAGGTGCAAAAA 534 >seq3161 Length=578 Score = 361 bits (400), Expect = 6e-95 Identities = 314/390 (81%), Gaps = 0/390 (0%) Strand=Plus/Plus Query 67848 GTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCG 67907 ||| || ||||||||||| ||||||||||| ||||| ||||||||||| | ||| || Sbjct 181 GTCTAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGGTTAGCACG 240 Query 67908 GTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTT 67967 ||||| | ||| |||| || | || ||| | |||| | ||||||||| Sbjct 241 GTTGATGATGTCACCCCAAGTGTTGATTACACGACCTTGAGAGTCAACTACAGACTGGTT 300 Query 67968 GAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGAT 68027 |||||||||||| || ||||||||||||||||| | |||||| |||||||||||||| Sbjct 301 GAAGTTGAAACCGTTAAGGTTGAATGCCATGGTAGAGATACCAAGAGCAGTGAACCAGAT 360 Query 68028 ACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGC 68087 |||||| |||||||||||||||||||||||||| || ||||| ||||||||||| || || Sbjct 361 ACCAACTACAGGCCATGCAGCAAGGAAGAAGTGAAGAGAACGAGAGTTGTTGAATGAAGC 420 Query 68088 ATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTC 68147 || |||||||| |||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct 421 GTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAAGTTTCTTC 480 Query 68148 TTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAG 68207 |||||||||||||||||||||| ||| || || | ||||| |||||||| | || Sbjct 481 TTCTTGACCGAACTTGTAACCAGCGTTAGCAGATTCGTTCTCAGTAGTTTCACGGATAAG 540 Query 68208 TGAAGAAGTAACCAGGGAACCATGCATTGC 68237 || ||||| |||| ||||| |||||||| Sbjct 541 AGATGAAGTTACCAATGAACCGTGCATTGC 570 >seq12 Length=429 Score = 214 bits (236), Expect = 2e-50 Identities = 307/432 (71%), Gaps = 8/432 (2%) Strand=Plus/Plus Query 67140 AAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAACAAAAACAGCGATA 67199 |||||||||| ||||| || ||||| ||||| | || ||| ||| || || ||||| Sbjct 1 AAAAACCAACCTGATTGTCCTAGAGGATAGATCAAGAACACAGAAACGAACACTGCGATT 60 Query 67200 GGACCAGAGAACGCAATAGCATTGTAGGGACGGA----TACCGATGAGACGTGCCAGTTC 67255 || | ||||| |||||||||||||| ||||| | ||| || ||||| || || Sbjct 61 GGTGCTGAGAATGCAATAGCATTGTAAGGACGAAGCTTTACAGAG----CGTGCAAGCTC 116 Query 67256 AAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCCACAAAATTCCA 67315 |||||| || |||||||| ||||||||||||||||| || || || || ||||| |||| Sbjct 117 AAACTGACGCAGCATGAACCCAATTAGAGCGAAAGCACCATGAAGAGCTACAAAGGTCCA 176 Query 67316 GAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGACCCCAAAGTAG 67375 || || || | |||| ||| || ||| || || |||| ||| || ||||| || | Sbjct 177 AAGACCACCCAATTGGCACCATCGTGTGAAGTCTCCTTGAGCCTCTGGGCCCCATAGGAA 236 Query 67376 AAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTGAGAAAATTAGC 67435 || | ||||| ||||| | || || |||||||| || ||||| | || || Sbjct 237 GAGCAATGAATGCCCCATGCTGTTTGCTGGAGTTGACACTGCTGCTGTTAAGAAGTTGCA 296 Query 67436 ACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGACAAACGTAGTACC 67495 ||| || || || | || | ||||| |||||||| ||| || || || || || Sbjct 297 ACCTTCTAGGTATGAACTTGCTAAGCCGTGCGTGTACCAAGATGTTACGAAAGTGGTTCC 356 Query 67496 AGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACC 67555 |||| ||||||||| | || | |||||| || ||||| || | ||||||||||| Sbjct 357 TGTAAACCAGCCACCCAAGGCAAGATAAGCGCAAGGGAAAAGTAGCAAGCCAGACCAACC 416 Query 67556 CACAAAGACAAA 67567 || || ||||| Sbjct 417 AACGAACACAAA 428 >seq213 Length=407 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 68326 ATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCG 68385 ||| ||||||||||||| |||||||| || ||||| |||| ||||| |||||||||||| Sbjct 80 ATGAAGTTGAAAGTACCCGAAATGCCTAGTGGCATACCGTCTGAGAATGAACCTTGACCG 139 Query 68386 AAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAG 68445 | || |||| | ||| || || | || |||||||| ||||||||||| || ||| | Sbjct 140 ATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGCG 199 Query 68446 ATCCAAGGACGCATACC 68462 ||||||||||||||||| Sbjct 200 ATCCAAGGACGCATACC 216 >seq7328 Length=399 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||||||||||||| |||||||||||||||| || ||||||| |||| ||||| || ||| Sbjct 36 CTCCCCAGGTAGGACTTGAACCTACGACCAACCGGTTAACAGCCGATCGCTCTACCACTG 95 Query 35571 AGCTACTGAGGAT 35583 ||||||||||||| Sbjct 96 AGCTACTGAGGAT 108 >seq1029 Length=1000 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 68695 ATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTGCAAGCAG 68753 ||||| ||||| |||||||| | || || | ||||| ||||| | |||| | | || Sbjct 519 ATGTCTACAGGAGGAGCAGCAACAAATGCAATAATGAATACAGAAG-TTGCAGTCAAAAG 577 Query 68754 CGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCAC 68813 ||||||||||| || || || |||||||||| |||||||||||| || ||| || || Sbjct 578 AGTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTGCTTGTAAC 637 Query 68814 CCATTCGCAGAA 68825 |||||| ||||| Sbjct 638 CCATTCACAGAA 649 >seq4603 Length=650 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 68242 AACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATG 68301 || || || |||||||| || |||||||| || ||||| ||||| |||||||| |||||| Sbjct 1 AAAAGTGAACCACCAAACACACCAGCAACACCTAGCATGTGGAAAGGGTGCATAAGGATG 60 Query 68302 TTGTGCTCTGCTTGGAACAC 68321 |||||||| |||||||| || Sbjct 61 TTGTGCTCAGCTTGGAAAAC 80 >seq2164 Length=396 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/129 (77%), Gaps = 8/129 (6%) Strand=Plus/Minus Query 68473 GAAAGTTCCCATTCACGTCCCATGTATGCAA-AGATACCAATCAGGAAGTG---AAAGAT 68528 ||||||||||| ||||| |||||||| ||| |||| || | | |||||| || ||| Sbjct 217 GAAAGTTCCCACTCACGACCCATGTA-GCAGCAGATGCCTAGGAAGAAGTGGCAAACGAT 159 Query 68529 TACGAGTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAAT 68588 || ||||| |||||||||| ||||| | ||| || || || | || ||||||||||| Sbjct 158 TA---GTTGGTAAGGACCACCGTTGTAAAGCCATTCGTCTAGTGAAGCAGCTTCCCAAAT 102 Query 68589 GGGATaaaa 68597 || ||||| Sbjct 101 AGGGTAAAA 93 >seq53 Length=414 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 68614 TTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCA 68673 |||||| |||||||||| |||||||| ||||||||||| || || || || ||||||| Sbjct 1 TTTGAAGTAGGAACAACTGCACCAGAGATGATGTTGTTGCCGTAAAGTAGAGAACCAGAT 60 Query 68674 ACAGGTTCACGAATACCATCG 68694 || |||||||| ||||| ||| Sbjct 61 ACTGGTTCACGGATACCGTCG 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571885708308120