Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq3161 358 7e-94 seq1947 347 1e-90 seq12 215 6e-51 seq213 127 2e-24 seq2164 109 6e-19 seq4603 98.7 1e-15 seq53 84.2 2e-11 seq2475 82.4 8e-11 >seq3161 Length=578 Score = 358 bits (396), Expect = 7e-94 Identities = 318/398 (80%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 158160 TTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAA 158219 ||||||| || |||||||| | || ||||| || || | |||||||| ||||| | Sbjct 578 TTTTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGA 519 Query 158220 CAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCG 158279 || || ||| |||||||||||||||||||| ||||| || || ||||| || | Sbjct 518 ACGAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTG 459 Query 158280 CAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTT 158339 | ||||| || ||||| |||||| | ||||||||||||||||||||||||||||| |||| Sbjct 458 CTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTT 399 Query 158340 CCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCG 158399 | | |||||||||||||||||||||||||| || || ||||||||||| || ||||| Sbjct 398 CTCTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTA 339 Query 158400 TCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTC 158459 |||| || |||||||||||||| ||||||||||||||||||||||| | |||| || Sbjct 338 TCTCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTC 279 Query 158460 AGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAG 158519 | |||||||| | ||||| |||| || | | ||||| ||| || |||||||||| Sbjct 278 AAGGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAG 219 Query 158520 TTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 158557 | ||||| ||||||||||| |||||||||||||| ||| Sbjct 218 TAATGCACGAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq1947 Length=534 Score = 347 bits (384), Expect = 1e-90 Identities = 396/532 (74%), Gaps = 0/532 (0%) Strand=Plus/Minus Query 159754 TTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGAT 159813 |||| || || |||||| ||||| |||||||| | ||| | | ||| | ||||| | Sbjct 534 TTTTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGT 475 Query 159814 TTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAG 159873 | ||||||||||| | || || ||||| |||||||| || ||||| | |||| | | Sbjct 474 TCCACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTG 415 Query 159874 CACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAAC 159933 |||| || |||| || ||||||| || || |||||||| |||| |||||||||||| Sbjct 414 CACTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATG 355 Query 159934 AAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCA 159993 ||||| || || ||||| || | ||||| | || ||||| ||||||||||| | Sbjct 354 GTGCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAA 295 Query 159994 CTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTC 160053 |||||||||| |||||||| |||||||| || | || || ||||||||||| ||| | | Sbjct 294 CTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGC 235 Query 160054 ATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTG 160113 | ||||||||| | ||||| || || | |||||||||| ||||||| | | | Sbjct 234 ACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAG 175 Query 160114 GCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAG 160173 |||| || || || | |||||||| || ||||| ||||||||| | |||||||||| Sbjct 174 GCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAG 115 Query 160174 ATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCAT 160233 | || ||||| || ||||||||||| ||||||||| | ||||||||||| | || |||| Sbjct 114 ACCCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCAT 55 Query 160234 GGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGT 160285 || |||| || || || || || ||||| || | ||||| || || || Sbjct 54 GGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq12 Length=429 Score = 215 bits (238), Expect = 6e-51 Identities = 308/431 (71%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 159330 TTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTGGCCATTGGC 159389 ||||| || || || |||||||| | |||||| | || |||||||| ||| | || Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 159390 GGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCC 159449 || ||| |||| || || |||| || || ||||||||| ||||| | || ||||| Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 159450 TATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGACGCTATGGGT 159509 || || || ||| ||||| | |||||||| || || || || || || ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 159510 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 159569 ||||| | || | || ||||| || ||| |||| || | ||| || ||||||||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 159570 CTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATG 159629 | || || | |||| ||||| || || || ||||| ||||| |||||||| |||||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 159630 CTCCGTCAGTTTGAACTGGCACGTCTCATTGGTA---TCCGTCCTTACAATGCTATTGCG 159686 || ||||||||||| || ||||| ||| || | | |||||||||||||||||||| Sbjct 128 CTGCGTCAGTTTGAGCTTGCACG-CTC--TGTAAAGCTTCGTCCTTACAATGCTATTGCA 72 Query 159687 TTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCC 159746 ||||| | || || || || || || || ||| | ||||| || | || || || Sbjct 71 TTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATCA 12 Query 159747 AGTTGGTTTTT 159757 |||||||||| Sbjct 11 GGTTGGTTTTT 1 >seq213 Length=407 Score = 127 bits (140), Expect = 2e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 157940 TTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCT 157999 ||||||||||| || |||||| |||||| || ||||| ||||| || || || ||||| Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 158000 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 158059 |||||| || |||| || ||||||||||||| ||||| || | |||||| || || || Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 158060 TCTGGTACTTTTAACTACAT 158079 || |||||||| |||| ||| Sbjct 99 TCGGGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 109 bits (120), Expect = 6e-19 Identities = 106/134 (79%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 157808 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 157867 || || || || |||||||| || ||||| || || ||||| || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 157868 CAACTCGTAGTATTTCACTTCCTCATTGGTATCT-ATGCATACATGGGACGTGAGTGGGA 157926 ||||| | || | |||||| || | || |||| ||| |||||||| ||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 157927 ACTTTCATACCGTT 157940 |||||| | ||||| Sbjct 212 ACTTTCTTTCCGTT 225 >seq4603 Length=650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158082 TTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTG 158141 |||| |||||||| || |||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 158142 GGGTATTCGGTGGATCTCTTTT 158163 | || || ||||| || ||||| Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq53 Length=414 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 157711 CGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGG 157770 |||||| ||||||||||| || ||||||| || | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 157771 TGCAGTTGTACCATCTTCCAA 157791 ||||||||| || |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 >seq2475 Length=244 Score = 82.4 bits (90), Expect = 8e-11 Identities = 79/99 (80%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 18523 TGTATTGA--TGGGAGTGTGGCGGAATCGGTAGACGCACCAGACTTAAAATCTGTTGA-C 18579 |||| ||| ||||||||||||||||| ||||||||| | ||||||||||| ||||| | Sbjct 74 TGTAGTGAATTGGGAGTGTGGCGGAATTGGTAGACGCTACGGACTTAAAATCCGTTGACC 133 Query 18580 CAATAAGGTCGTGGGAGTTCAAGTCTCCCTACTCCTATA 18618 | | | ||||||| | |||||| || | | | ||| ||| Sbjct 134 CTAAACGGTCGTGAGGGTTCAATTCCCTCCATTCCCATA 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548212691244120