Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq3161 390 1e-103 seq1947 324 2e-83 seq12 239 5e-58 seq213 118 1e-21 seq2164 114 1e-20 seq53 93.3 5e-14 seq4603 89.7 6e-13 >seq3161 Length=578 Score = 390 bits (432), Expect = 1e-103 Identities = 324/396 (82%), Gaps = 0/396 (0%) Strand=Plus/Minus Query 151421 TTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAAC 151480 ||||| |||||||||||||| |||| ||||| || || | ||||| || || || ||| Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 151481 GAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCC 151540 || || ||| ||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 151541 GCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCG 151600 ||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||| Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 151601 CTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTC 151660 || ||||||||||| || ||||||||||| || ||||||||||||||||| |||||| || Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 151661 AGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAG 151720 ||||||||||||||||| ||||||||||||||||||||||| | | || ||| Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 151721 GGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTT 151780 || || | ||||| |||| ||| | | |||||||| || ||||||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 151781 ATGCACGAGCGTAATGCTCACAACTTCCCTCTCGAC 151816 |||||||||||||| |||||||||||||| || ||| Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq1947 Length=534 Score = 324 bits (358), Expect = 2e-83 Identities = 393/533 (74%), Gaps = 2/533 (0%) Strand=Plus/Minus Query 152819 TTTTCGCTCC-ATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGA 152877 |||| || || | |||| || || || ||||||||||| ||| | |||||| | ||||| Sbjct 534 TTTTTGCACCTAGCTTT-GGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGG 476 Query 152878 TTCCACAACTGGACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGG 152937 ||||||||||||||| | || || || || ||||||||||| || || | || |||| Sbjct 475 TTCCACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCT 416 Query 152938 GCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAA 152997 || | |||| ||| |||||||| | ||||| ||||| || ||| | ||||||| || Sbjct 415 GCACTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGAT 356 Query 152998 CAAGCAAACACTTTCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTT 153057 |||||||| ||| || ||| | ||||| | ||||||||||| || ||||| Sbjct 355 GGTGCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTA 296 Query 153058 ACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTT 153117 ||||| |||||||||||||| ||||| |||||| | || || || || || ||| | Sbjct 295 ACTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTG 236 Query 153118 CATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATT 153177 || ||||| ||||| ||||| || || | |||||||||| | ||||||| || | Sbjct 235 CACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTA 176 Query 153178 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAA 153237 || || || || || | |||||||| || || || |||||||| || | || ||||| Sbjct 175 GGCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAA 116 Query 153238 GATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCT 153297 || |||||||| || || ||||| || || || ||| | |||||||||||| |||| || Sbjct 115 GACCCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCA 56 Query 153298 TGGTTGGCACCTGTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGT 153350 ||| |||| || ||||| || || || || | || |||||||| ||||| Sbjct 55 TGGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq12 Length=429 Score = 239 bits (264), Expect = 5e-58 Identities = 313/433 (72%), Gaps = 8/433 (2%) Strand=Plus/Minus Query 152394 TTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGG 152453 ||| || || |||||||||||||| | || ||||| || ||||||||||| | || Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGG 370 Query 152454 CGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTC 152513 || ||| |||| || || ||||||| || |||||| || ||||| || |||||||| Sbjct 369 TGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTC 310 Query 152514 CTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGG 152573 || || || || ||||| | || || ||||| || ||||||||| | ||||| Sbjct 309 ATACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGG 250 Query 152574 TCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCA 152633 ||||| | || | || ||||| || ||||||||||| || ||| ||||| || Sbjct 249 GCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCA 190 Query 152634 GCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCAT 152693 | || || || ||| | ||||| || || || || |||||||||||||| || ||||| Sbjct 189 ATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCAT 130 Query 152694 GCTTCGCCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTG 152749 ||| || |||||||| || ||||| || ||| | ||||| ||||||||||||| Sbjct 129 GCTGCGTCAGTTTGAGCTTGCACG----CTCTGTAAAGCTTCGTCCTTACAATGCTATTG 74 Query 152750 CGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAAT 152809 | ||||| | || ||||| || || ||| || || | ||||| ||||| || |||| Sbjct 73 CATTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAAT 14 Query 152810 CGAGTTGGTTTTT 152822 | |||||||||| Sbjct 13 CAGGTTGGTTTTT 1 >seq213 Length=407 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151199 TTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCA 151258 || ||||||||||| |||||| || || |||||||| |||||||| ||||| | ||| Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 151259 GTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATT 151318 || ||| || |||| || ||||||||||||| ||||| || | ||||| || || ||| Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 151319 TCTGGCACATTCAACTACAT 151338 || || || ||||||| ||| Sbjct 99 TCGGGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 114 bits (126), Expect = 1e-20 Identities = 106/132 (80%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 151067 TTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTC 151126 || || || || |||||||| || || || || |||||||| |||||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 151127 CAACTCGTTGTCTTCCACTTCCTGATTGGTATCT-ATGCTTACATGGGTCGTGAGTGGGA 151185 ||||| | || | ||||||| | | || |||| ||| |||||||||||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 151186 ACTGTCTTACCG 151197 ||| |||| ||| Sbjct 212 ACTTTCTTTCCG 223 >seq53 Length=414 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 150970 CGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGG 151029 ||| || ||||||||||| || |||||||||| | ||||| ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 151030 TGCTGTTGTTCCTTCTTCTAA 151050 ||| ||||||||| |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 >seq4603 Length=650 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 151341 TTGTCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTG 151400 |||| |||||||| ||||||||||| || |||||||| ||||| ||||| ||||| |||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 151401 GTGTCTTCGGTGGATCGCTCTT 151422 |||| || ||||| || || || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549460323224520