Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq3161 302 5e-77 seq1947 255 7e-63 seq12 196 6e-45 seq213 116 4e-21 seq1029 96.9 4e-15 >seq3161 Length=578 Score = 302 bits (334), Expect = 5e-77 Identities = 313/407 (77%), Gaps = 6/407 (1%) Strand=Plus/Minus Query 72823 GCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGT 72882 ||||||||||||||| | || ||||||||||| ||| | || || || |||||||| | Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 72883 CAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCAT 72942 ||| || || |||||||| |||||||||||||| || |||||||||||||| || Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 72943 GGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACAC 73002 || ||||| ||| | |||||||||| || || |||||||||||||||||||| | ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 73003 TTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACA 73062 |||||||| |||| || |||||||| || | ||||| || | | ||||||| ||| Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 73063 ATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAG 73122 |||||||||||||||||||| |||||||||||||| || || || || | | || Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGG---T 274 Query 73123 ATTGT-ACCAACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATG 73179 ||| | ||||| ||||| || | | ||| | || ||||| || |||||||| ||| Sbjct 273 CGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATG 214 Query 73180 CATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 73226 || || | || || |||||||||||||||||| | ||||| | ||| Sbjct 213 CACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCAGTTGA 167 >seq1947 Length=534 Score = 255 bits (282), Expect = 7e-63 Identities = 388/552 (70%), Gaps = 23/552 (4%) Strand=Plus/Minus Query 73826 TTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTC 73885 || |||||| || ||||| || |||||||| |||| || | ||| | || || ||| Sbjct 532 TTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTC 473 Query 73886 CACAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCA 73945 ||||| || ||||| || || || ||||||||||| || || | | || | ||| Sbjct 472 CACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCA 413 Query 73946 TTACTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAA 74005 | || ||||| || ||||| |||||||| ||||||| ||| |||||| Sbjct 412 CTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGA---------- 363 Query 74006 TACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAA 74065 || || | | | ||| | || ||| | || ||| ||||||| |||| ||| Sbjct 362 -----TGGAGAT--GGTGCAAAC----ACATTCCGTGCGTTCAATCCTACTCAGGCTGAA 314 Query 74066 GAGACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTT 74125 ||||| || |||| | ||||| ||| | |||||||||||||| ||||| ||||||| Sbjct 313 GAGACCTACTCTATGGTAACTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTC 254 Query 74126 TCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACA 74185 || ||||| | | || |||||| | ||| | || || || || | ||| | |||| Sbjct 253 TCTAACAAGCGTTGGTTGCACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATG 194 Query 74186 TCATCTATAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAA 74245 |||| ||| || |||| ||||| || ||| | | || || ||||| || |||||| Sbjct 193 AGTGCTATTGGTGTCTTAGGCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAA 134 Query 74246 GAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTT 74305 ||||| | |||||||||||||| || || |||||||||||||| || ||||| ||| || Sbjct 133 GAGATTCGCGCAGCAGAAGACCCTGAATTCGAAACCTTCTACACAAAAAACAT-CTTGTT 75 Query 74306 -AATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTT 74364 || |||||||| ||||||||||| | || || || || || || || |||| || Sbjct 74 GAACGAAGGTATTCGAGCATGGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATT 15 Query 74365 CCCAGAAGAAGT 74376 ||| || || || Sbjct 14 CCCTGAGGAGGT 3 >seq12 Length=429 Score = 196 bits (216), Expect = 6e-45 Identities = 276/385 (72%), Gaps = 6/385 (2%) Strand=Plus/Minus Query 73399 TTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGG 73458 ||| || ||| | || |||||||| | ||||||| ||||| ||||| || || | || Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGG 370 Query 73459 AGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTC 73518 || ||||| |||||| |||||||| || || |||||||| || || | ||| || Sbjct 369 TGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTC 310 Query 73519 ATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGG 73578 ||| || || || || || ||||| |||||||| ||||| || | | ||||| Sbjct 309 ATACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGG 250 Query 73579 TCATAGTCTATTG---TTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTT 73635 ||| || |||| ||||| ||||| |||||||| |||||||| | |||||||| Sbjct 249 GCAT--TC-ATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTG 193 Query 73636 TCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTT 73695 ||||| ||||| || |||| ||||||||| | ||||| | || | || || || || Sbjct 192 CCAATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTT 133 Query 73696 CATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGC 73755 |||||| | ||||||||| ||||| | ||| | | ||||||||||| || | || Sbjct 132 CATGCTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAGCTTCGTCCTTACAATGCTATTGC 73 Query 73756 TTTTTCAGCAGTTATCGCAGTATTC 73780 || |||||| |||||||| ||| Sbjct 72 ATTCTCAGCACCAATCGCAGTGTTC 48 >seq213 Length=407 Score = 116 bits (128), Expect = 4e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 72596 TAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAG 72655 |||| ||| | |||||||| |||||| ||||| ||||| || | || || ||| | Sbjct 218 TAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTG 159 Query 72656 TATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCT 72715 ||||| | | || ||| ||||||| ||||||||||| || |||||||||||||| || | Sbjct 158 TATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTT 99 Query 72716 CAGGTACGTTCAACTTCAT 72734 | ||||| ||||||||||| Sbjct 98 CGGGTACTTTCAACTTCAT 80 >seq1029 Length=1000 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||||| ||||| ||| |||||| || ||| | ||| |||||||||||||||| || Sbjct 649 TTCTGTGAATGGGTTACAAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 590 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| |||| | ||||| || || |||||| | ||||| | ||||||||| Sbjct 589 ATGATCCCTACTCTTTTGACTGCAACTTCTGTATTCATTATTGCATTTGTTGCTGCTCCT 530 Query 72355 CCAGTCGATAT 72365 || || || || Sbjct 529 CCTGTAGACAT 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572704666736280