Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq3161 361 6e-95 seq1947 316 2e-81 seq12 203 4e-47 seq2164 123 3e-23 seq213 123 3e-23 seq53 105 7e-18 >seq3161 Length=578 Score = 361 bits (400), Expect = 6e-95 Identities = 321/400 (80%), Gaps = 1/400 (0%) Strand=Plus/Minus Query 157633 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACA 157692 ||||| || |||||||| | || ||||| || ||| | |||||||| ||||| | Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 157693 GAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCT 157752 || || ||| ||||||||||||||||||||||||||| || |||||||| |||||| Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 157753 GCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGT 157812 |||||||||||||| ||||| || ||||||||||||||||||||||||||| | | Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 157813 CTTCACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTA 157872 |||||||||||||| || ||||||||||| || || |||||||||||||| || || | Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 157873 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 157932 ||||||||||||||||| ||||||||||||||||||||||| | |||| ||| Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 157933 GGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTT 157992 |||||||| | ||||| |||| || || | ||||| ||| || ||||||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 157993 ATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTG 158032 ||||| ||||||||||| |||||||||||||| || |||| Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGA-CTTG 178 >seq1947 Length=534 Score = 316 bits (350), Expect = 2e-81 Identities = 390/533 (73%), Gaps = 0/533 (0%) Strand=Plus/Minus Query 159235 TTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGT 159294 |||| || || |||||| ||||| ||||| ||| | ||| | |||||| | ||||||| Sbjct 534 TTTTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGT 475 Query 159295 TCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAG 159354 ||||||| |||||||| ||||| ||||| |||||||| || ||||| | |||| | | Sbjct 474 TCCACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTG 415 Query 159355 CACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAAC 159414 ||||||| | ||| |||||||| | |||||||| || || | | || |||||||| Sbjct 414 CACTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATG 355 Query 159415 AAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCA 159474 |||||||| || ||||| || | ||||| | || ||||| || |||||||| | Sbjct 354 GTGCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAA 295 Query 159475 CTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTC 159534 |||||||||| |||||||| |||||||| || | || || ||||||||||| ||| | | Sbjct 294 CTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGC 235 Query 159535 ATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTG 159594 | ||||| ||| | ||||| || || | ||||| |||| |||||| | | | Sbjct 234 ACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAG 175 Query 159595 GTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAG 159654 | || || || || | |||||||| || ||||| ||||||||| | |||||||||| Sbjct 174 GCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAG 115 Query 159655 ATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTT 159714 | || ||||| ||||| |||||||| || ||||| | |||| ||||| | || || | Sbjct 114 ACCCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCAT 55 Query 159715 GGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTT 159767 || |||| || || || || || ||||| | | ||||| || || ||| Sbjct 54 GGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq12 Length=429 Score = 203 bits (224), Expect = 4e-47 Identities = 305/433 (70%), Gaps = 8/433 (2%) Strand=Plus/Minus Query 158810 TTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTACCCACTGCTTATCTTGCTATTGG 158869 ||| || || ||||| |||||||| | || ||| | || ||||||||||| | || Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGG 370 Query 158870 CGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACACATGGACTCGCTACTTC 158929 || ||| |||| || || ||||||| || ||||| || || || | || | ||| Sbjct 369 TGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTC 310 Query 158930 CTATCTTGAGGGTGCAAACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGG 158989 || || || ||| ||||| | ||||||||||| || |||||||| | ||||| Sbjct 309 ATACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGG 250 Query 158990 TCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCA 159049 ||||| | || | || ||||| || ||||||||||| || ||| | ||| ||| Sbjct 249 GCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCA 190 Query 159050 ACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCAT 159109 | | || || || |||| ||||| || || || ||||| || || |||||||| ||||| Sbjct 189 ATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCAT 130 Query 159110 GCTTCGCCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTG 159165 ||| || |||||||| || ||||| || ||| | ||||| ||||||||||||| Sbjct 129 GCTGCGTCAGTTTGAGCTTGCACG----CTCTGTAAAGCTTCGTCCTTACAATGCTATTG 74 Query 159166 CGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGT 159225 | ||||| | || || || || || || || ||| | ||||| || || || || | Sbjct 73 CATTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAAT 14 Query 159226 CCAGTTGGTTTTT 159238 | |||||||||| Sbjct 13 CAGGTTGGTTTTT 1 >seq2164 Length=396 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 157279 TTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTC 157338 || ||||| || |||||||| || ||||| || || |||||||||||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 157339 CAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAA 157398 ||||| | || | |||||| | | ||||||| ||| ||||| |||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 157399 CTTTCTTACCGTT 157411 ||||||| ||||| Sbjct 213 CTTTCTTTCCGTT 225 >seq213 Length=407 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 157411 TTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCA 157470 ||||||||||| || |||||| ||| || ||||| |||||||| || ||||| | ||| Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 157471 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 157530 |||||| || |||| || ||||||||||||| ||||| || | |||||| || || || Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 157531 TCTGGTACTTTTAACT 157546 || |||||||| |||| Sbjct 99 TCGGGTACTTTCAACT 84 >seq53 Length=414 Score = 105 bits (116), Expect = 7e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 157182 CGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGG 157241 ||||||||| || |||||||| |||||||||| | || |||||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 157242 TGCAGTTGTTCCTTCTTCAAA 157262 ||||||||||||| ||||||| Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545112805631280