Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq1947 334 9e-87 seq3161 318 7e-82 seq12 223 4e-53 seq213 116 4e-21 seq2164 102 1e-16 seq4603 98.7 1e-15 seq53 84.2 3e-11 >seq1947 Length=534 Score = 334 bits (370), Expect = 9e-87 Identities = 385/518 (74%), Gaps = 0/518 (0%) Strand=Plus/Minus Query 179413 TTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACA 179472 |||||||| || || ||||| | ||| | || ||||| ||||| ||||||||||||||| Sbjct 520 TTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTCCACAACTGGACA 461 Query 179473 CTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCT 179532 || ||||| || ||||||||||| || || || | | || | ||| || || | ||| Sbjct 460 CTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCACTTCTTTGTGCA 401 Query 179533 ATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTT 179592 |||||||| | ||| || ||||| || ||| |||||||||||| ||||||||||| Sbjct 400 ATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGTGCAAACACATTC 341 Query 179593 AAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTT 179652 |||||| | |||| || | || |||||||| |||||||| || || |||||||| Sbjct 340 CGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACTGCAAACCGTTTC 281 Query 179653 TGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTG 179712 ||||| |||||||| || || | || || ||||||||||| |||||||| | ||| Sbjct 280 TGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCACTTCTTCATGCTT 221 Query 179713 TTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAAT 179772 |||||||| || | ||||||||| | | ||||||| || | || ||||| || || Sbjct 220 TTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGCCTAGCGCTAAAC 161 Query 179773 CTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAG 179832 | ||||||||||| || || ||||||||| | ||||||||||| ||||| ||||| Sbjct 160 TTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGACCCTGAATTCGAA 101 Query 179833 ACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCT 179892 || ||||| ||||| ||||| | |||| ||||| | || || ||| |||| || Sbjct 100 ACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGGATGGCGGCTCAA 41 Query 179893 GATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGT 179930 || || ||||| ||||| | | ||||| || || || Sbjct 40 GACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq3161 Length=578 Score = 318 bits (352), Expect = 7e-82 Identities = 319/413 (77%), Gaps = 1/413 (0%) Strand=Plus/Minus Query 178138 TTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAA 178197 ||||||| || ||||| || | || ||||| || || ||||||| || || || | Sbjct 578 TTTTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGA 519 Query 178198 CTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCG 178257 || || ||| ||||||||||||||| |||||||||||||| || ||||| || | Sbjct 518 ACGAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTG 459 Query 178258 CAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTT 178317 | || || |||||||| |||||| | ||||||||||| || || ||||||||||| |||| Sbjct 458 CTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTT 399 Query 178318 CACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTG 178377 | || ||||||||||| || ||||||||||||||||| ||||||||||| || |||||| Sbjct 398 CTCTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTA 339 Query 178378 TATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGAC 178437 | || ||||||||||| ||||| || || ||||||||||||||||| | | ||| | Sbjct 338 TCTCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTC 279 Query 178438 AAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAG 178497 |||| ||||| ||||||| |||| ||| | |||||||||| || || ||||||| Sbjct 278 AAGGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAG 219 Query 178498 TCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGATCTTGCAGCAGCTGA 178550 | |||||||| | || || || |||||||| || || | ||| ||| ||| Sbjct 218 TAATGCACGAGCGTAA-CGCTCACAACTTCCCACTAGACTTGGCATCAGTTGA 167 >seq12 Length=429 Score = 223 bits (246), Expect = 4e-53 Identities = 309/432 (72%), Gaps = 8/432 (2%) Strand=Plus/Minus Query 178975 TTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGC 179034 ||||| || || ||||||||||| | |||||| | || |||||||||||| | || Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 179035 GGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCATGGTCTTGCTAGTTCC 179094 || ||| |||| || || |||| || || ||||||||| || || | || ||||| Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 179095 TATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGT 179154 || || |||||| ||||| | || ||||| || || || || || | ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 179155 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 179214 ||||| | || | || ||||| || ||| |||| || | ||| || ||||||||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 179215 CTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATG 179274 | || || || |||| || || ||||| || ||||| ||||| |||||||| |||||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 179275 CTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCTTACAATGCGATTGC 179330 || ||||||||||| || ||||| || ||| | |||||||||||||| ||||| Sbjct 128 CTGCGTCAGTTTGAGCTTGCACG----CTCTGTAAAGCTTCGTCCTTACAATGCTATTGC 73 Query 179331 TTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATC 179390 || | | || || || || |||||| ||| || | ||||| || || |||||||| Sbjct 72 ATTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATC 13 Query 179391 CAGTTGGTTCTT 179402 ||||||| || Sbjct 12 AGGTTGGTTTTT 1 >seq213 Length=407 Score = 116 bits (128), Expect = 4e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 177919 TAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAG 177978 |||||||||| || |||||| ||| || ||||||||||| |||||||| || | || | Sbjct 218 TAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTG 159 Query 177979 TCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCT 178038 | || | |||| || ||||||||||||||||||| || | |||||| || || || | Sbjct 158 TATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTT 99 Query 178039 CTGGTACTTTTAACTACAT 178057 | |||||||| |||| ||| Sbjct 98 CGGGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 102 bits (112), Expect = 1e-16 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 177786 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 177845 || || || || |||||||| || ||||| || || ||||| || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 177846 CAACTCGTAGTCTTTCACTTCCTTATCGGCATCT-ATGCATATATGGGACGTGAGTGGGA 177904 ||||| | || | |||||| | | ||||||| ||| || ||||| ||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 177905 ACTTTCATACCGT 177917 |||||| | |||| Sbjct 212 ACTTTCTTTCCGT 224 >seq4603 Length=650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 178060 TTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTG 178119 |||| |||||||| || ||||| |||||||||||||| ||||||||||| |||||||||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 178120 GGGTATTCGGTGGATCTCTTTT 178141 | || || ||||| || ||||| Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq53 Length=414 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 177689 CGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGG 177748 |||||| ||||||||||| || ||||||| || | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 177749 TGCAGTTGTACCATCTTCCAA 177769 ||||||||| || |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605488596313560