Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq3161 298 2e-76 seq2164 109 2e-19 seq4603 86.0 2e-12 >seq3161 Length=578 Score = 298 bits (330), Expect = 2e-76 Identities = 300/390 (77%), Gaps = 0/390 (0%) Strand=Plus/Minus Query 20093 GCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGT 20152 || ||||||||||| | || || || || ||| | ||||| |||||||| | ||| | Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 20153 CAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCAT 20212 ||| |||||||||||| || ||||||||||| || || ||||| || || || || Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 20213 GGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACAC 20272 ||||||||||| ||| | ||||||||||||||||| |||||||| |||||||| ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 20273 TTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACA 20332 |||||||||||||| ||||| || || || || |||||| |||| | || | ||||| Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 20333 ATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGT 20392 ||||| || || || |||||||||||||| |||||||| | | ||| | |||||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 20393 GTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCAT 20452 || || | ||||||| |||||| |||| |||||||| || || | || || ||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 20453 GAACGGAATGCTCATAACTTCCCACTTGAC 20482 || || || ||||| ||||||||||| ||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq2164 Length=396 Score = 109 bits (120), Expect = 2e-19 Identities = 100/124 (81%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 19733 TTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTC 19792 || ||||| |||||||||||| |||||| || |||||||| |||||||| || || | | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 19793 CAACTTGTGGTCTTCCACTTCCTCATTGGCATCT-ATGCTTACATGGGACGAGAGTGGGA 19851 ||||| | || | ||||||| || | ||||||| ||| |||||||| || |||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 19852 ACTT 19855 |||| Sbjct 212 ACTT 215 >seq4603 Length=650 Score = 86.0 bits (94), Expect = 2e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 20009 GTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGT 20068 || |||||||| || || ||||| || |||||||| ||||||||||| ||||| |||||| Sbjct 80 GTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTGGT 21 Query 20069 GTATTCGGTGGGTCACTATT 20088 || || ||||| ||||| || Sbjct 20 GTGTTTGGTGGTTCACTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148787106634878